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The map label for this gene is agaB [H]

Identifier: 146299839

GI number: 146299839

Start: 2467503

End: 2468918

Strand: Direct

Name: agaB [H]

Synonym: Fjoh_2081

Alternate gene names: 146299839

Gene position: 2467503-2468918 (Clockwise)

Preceding gene: 146299838

Following gene: 146299840

Centisome position: 40.47

GC content: 34.96

Gene sequence:

>1416_bases
ATGAATTTAAAGAAACATTCCGTTTATGCCTTATTCGGTTTTTTAAGTCTCACATTGCATGCGCAGCATAAAAATACATA
TCAAAAAGTCGAAGCCAGACAAAATGCTTTAGATCCAAAATGGGTAGCGTATGATGCTAAAACTATTGATAAACTTCCTG
GATTTAAAATTAAAAAAGAGTCATCAGCCTCTGTTTACGGCAGTTCTAAAATGTGGCAGAAAGAAGCAACCGGATTTTTT
AGAACCGAAAAAATAGACAACAGATGGTGGATTATTGACCCGGAAGGTTATCCCTATATTTATAAAGGAATTGCGGTATT
TAATGCAGGACGTTCTGAAAATCAGCAAAAAGCATTTGATAAGAAATACGGCAGCAAAGAAAACTGGGTAAAACAAGAAT
CAAAATTACTTCGCGATAACGGATTTAACGGCGTAGGAGCATGGTCGAATGTTGATTTAGTTCGAAATGCTGAAAATCCT
TTGGTTTACACGGTTATCATTTCGCCAATGGGAATGTATCATTCCGATCATATTAAAAAATTTGGAGGAAAATATAAAGA
AGCAAGCTGGCAGAATTACCGTTTTGATTTGGTAATGGTTTTTGATAAAGAATTTGATTCTTACATTGAAAAATCGGTAA
AAGAGATTGCTCAGTACAAAGATGATAAGTATTTGATGGGTTATTTTACTGATAATGAACTGCCTTGGTATAACGACGCA
TTAGATAAACATTTAACTTTATTGGCCAAAGATGAACAGGGTTATATTGCTGCAAAAGAGTGGTTTGATAAAAGAAAAGG
ATTCAATGCTTCAATCTCTGATATTACTCAGGAAGACCGAATGGCATTTACTGCTTTTTACTTTGAAACTTACATGAAAA
AGGTAACCGAGGCATTAAGAAAAGCAGATCCAAACCATATGTATTTAGGATGCCGATTCAATCAGGATAAAGATCAGGAA
CTAACTAATCCGGAGATTTTTAAAGTGGCAGGAAAGTATATGGATATCATTTCGATCAATCATTACAGAAAATGGGAGCC
AAATCAGGATTTAATGAATAAATGGGGCGAATGGTCAGGAAAACCGTTCCTAATTACAGAATGGTACACTAAAGGAGAAG
ATTCTGGTTTGCCAAACAATACAGGAGCAGGATGGCTGGTTCGGACTCAGAAAGAAAGAGGACTGTTTTATCAGAATTTC
ACTTTAGAACTTTTAAAAAATAAAAACTCAGTAGGCTGGCATTGGTTCAAATATATGGATAATGATCCGCAGGATTTAAG
CACAGATTATTCAAACCGAGATTCGAACAAAGGAATCGTAAACAGCAATTTCGAACCGTATCTGCCTTTATTAAAAGAGA
TGAAAGTTATTAATGATAGCGCCTACGAACTGACACGTTATTTTGATAAAATGTAA

Upstream 100 bases:

>100_bases
CGATCATATTTATTTATCGAAATAAGATTTCTTTTTTATTACACAATTTCTTTATGGGGCAGTTTTTTTGCTGTCCCATA
ATTCTTCAAAAACAATTAAA

Downstream 100 bases:

>100_bases
AAATCTTTTAAACACATAGAAACATAGATTTTTTAGACTTAAAAAAAGGATACTAAAAGAAACTAGTTTCTAACACATAG
CTAAACTTTGTTAGTAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MNLKKHSVYALFGFLSLTLHAQHKNTYQKVEARQNALDPKWVAYDAKTIDKLPGFKIKKESSASVYGSSKMWQKEATGFF
RTEKIDNRWWIIDPEGYPYIYKGIAVFNAGRSENQQKAFDKKYGSKENWVKQESKLLRDNGFNGVGAWSNVDLVRNAENP
LVYTVIISPMGMYHSDHIKKFGGKYKEASWQNYRFDLVMVFDKEFDSYIEKSVKEIAQYKDDKYLMGYFTDNELPWYNDA
LDKHLTLLAKDEQGYIAAKEWFDKRKGFNASISDITQEDRMAFTAFYFETYMKKVTEALRKADPNHMYLGCRFNQDKDQE
LTNPEIFKVAGKYMDIISINHYRKWEPNQDLMNKWGEWSGKPFLITEWYTKGEDSGLPNNTGAGWLVRTQKERGLFYQNF
TLELLKNKNSVGWHWFKYMDNDPQDLSTDYSNRDSNKGIVNSNFEPYLPLLKEMKVINDSAYELTRYFDKM

Sequences:

>Translated_471_residues
MNLKKHSVYALFGFLSLTLHAQHKNTYQKVEARQNALDPKWVAYDAKTIDKLPGFKIKKESSASVYGSSKMWQKEATGFF
RTEKIDNRWWIIDPEGYPYIYKGIAVFNAGRSENQQKAFDKKYGSKENWVKQESKLLRDNGFNGVGAWSNVDLVRNAENP
LVYTVIISPMGMYHSDHIKKFGGKYKEASWQNYRFDLVMVFDKEFDSYIEKSVKEIAQYKDDKYLMGYFTDNELPWYNDA
LDKHLTLLAKDEQGYIAAKEWFDKRKGFNASISDITQEDRMAFTAFYFETYMKKVTEALRKADPNHMYLGCRFNQDKDQE
LTNPEIFKVAGKYMDIISINHYRKWEPNQDLMNKWGEWSGKPFLITEWYTKGEDSGLPNNTGAGWLVRTQKERGLFYQNF
TLELLKNKNSVGWHWFKYMDNDPQDLSTDYSNRDSNKGIVNSNFEPYLPLLKEMKVINDSAYELTRYFDKM
>Mature_471_residues
MNLKKHSVYALFGFLSLTLHAQHKNTYQKVEARQNALDPKWVAYDAKTIDKLPGFKIKKESSASVYGSSKMWQKEATGFF
RTEKIDNRWWIIDPEGYPYIYKGIAVFNAGRSENQQKAFDKKYGSKENWVKQESKLLRDNGFNGVGAWSNVDLVRNAENP
LVYTVIISPMGMYHSDHIKKFGGKYKEASWQNYRFDLVMVFDKEFDSYIEKSVKEIAQYKDDKYLMGYFTDNELPWYNDA
LDKHLTLLAKDEQGYIAAKEWFDKRKGFNASISDITQEDRMAFTAFYFETYMKKVTEALRKADPNHMYLGCRFNQDKDQE
LTNPEIFKVAGKYMDIISINHYRKWEPNQDLMNKWGEWSGKPFLITEWYTKGEDSGLPNNTGAGWLVRTQKERGLFYQNF
TLELLKNKNSVGWHWFKYMDNDPQDLSTDYSNRDSNKGIVNSNFEPYLPLLKEMKVINDSAYELTRYFDKM

Specific function: Hydrolyzes agarose to yield predominantly neoagarotetraose and neoagarohexaose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 50 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42 [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 55454; Mature: 55454

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKKHSVYALFGFLSLTLHAQHKNTYQKVEARQNALDPKWVAYDAKTIDKLPGFKIKKE
CCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCEEECC
SSASVYGSSKMWQKEATGFFRTEKIDNRWWIIDPEGYPYIYKGIAVFNAGRSENQQKAFD
CCCCCCCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHH
KKYGSKENWVKQESKLLRDNGFNGVGAWSNVDLVRNAENPLVYTVIISPMGMYHSDHIKK
HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCHHHHHHHH
FGGKYKEASWQNYRFDLVMVFDKEFDSYIEKSVKEIAQYKDDKYLMGYFTDNELPWYNDA
HCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH
LDKHLTLLAKDEQGYIAAKEWFDKRKGFNASISDITQEDRMAFTAFYFETYMKKVTEALR
HHHHEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KADPNHMYLGCRFNQDKDQELTNPEIFKVAGKYMDIISINHYRKWEPNQDLMNKWGEWSG
HCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCC
KPFLITEWYTKGEDSGLPNNTGAGWLVRTQKERGLFYQNFTLELLKNKNSVGWHWFKYMD
CCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHCCCEEECEEHEEHHCCCCCCEEEEEECC
NDPQDLSTDYSNRDSNKGIVNSNFEPYLPLLKEMKVINDSAYELTRYFDKM
CCCHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MNLKKHSVYALFGFLSLTLHAQHKNTYQKVEARQNALDPKWVAYDAKTIDKLPGFKIKKE
CCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCEEECC
SSASVYGSSKMWQKEATGFFRTEKIDNRWWIIDPEGYPYIYKGIAVFNAGRSENQQKAFD
CCCCCCCCCHHHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHH
KKYGSKENWVKQESKLLRDNGFNGVGAWSNVDLVRNAENPLVYTVIISPMGMYHSDHIKK
HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCHHHHHHHH
FGGKYKEASWQNYRFDLVMVFDKEFDSYIEKSVKEIAQYKDDKYLMGYFTDNELPWYNDA
HCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHH
LDKHLTLLAKDEQGYIAAKEWFDKRKGFNASISDITQEDRMAFTAFYFETYMKKVTEALR
HHHHEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KADPNHMYLGCRFNQDKDQELTNPEIFKVAGKYMDIISINHYRKWEPNQDLMNKWGEWSG
HCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCC
KPFLITEWYTKGEDSGLPNNTGAGWLVRTQKERGLFYQNFTLELLKNKNSVGWHWFKYMD
CCEEEEECCCCCCCCCCCCCCCCCEEEEEHHHCCCEEECEEHEEHHCCCCCCEEEEEECC
NDPQDLSTDYSNRDSNKGIVNSNFEPYLPLLKEMKVINDSAYELTRYFDKM
CCCHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8193156 [H]