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The map label for this gene is agaB34 [H]

Identifier: 146299665

GI number: 146299665

Start: 2202628

End: 2204715

Strand: Direct

Name: agaB34 [H]

Synonym: Fjoh_1905

Alternate gene names: 146299665

Gene position: 2202628-2204715 (Clockwise)

Preceding gene: 146299661

Following gene: 146299671

Centisome position: 36.13

GC content: 37.64

Gene sequence:

>2088_bases
ATGCTTTTATGTATTAATGTAAGCGCTCAGACTGTTACACCTTTTATAACATCTGGCGATCAGACAAGACTCCTGCAGCA
GCAAGGTACAGTAAATTTCGGAACCAATTCCGGGACCAATCCCTCAACAGTTACGGTTAACGCAGGAACGACTTACCAGA
CAATGGACGGTTTTGGTTACACACTTACCGAAGGAAGTGCCGAAGTAATCAGCGGAATGGCCGCAACACAGCAAAATCAA
TTATTAAATGATTTGTATAATCCAAATACAGGATTAAATGCAAGCGTAGTTCGTATTAGTATTGCAGCTTCAGATTTAAG
CAGTTCTTCTTATAGTTATAATGAAACTTCCGGCGATACCAATATGAACAATTTTAGTTTGAACGGACCGGATCTAACGT
ATTTAATTCCAATTATTAAAAAGATCCAGCAGATCAATCCAAACATTAAAATATTGGCAACACCGTGGTCAGCGCCCCGC
TGGATGAAGACTAACAATTCATGGATAGGAGGAAGTCTGCAGACACAATATTATGCTGCTTATGCAAGATATTTTGTAAA
ATATCTTCAAGCTATGCAGGCACAGGGAATTCCAATTTGGGCAATCACACCTCAAAATGAACCTGAAAATCCGCATAACG
AACCAAGTATGCTGATGAATTCTACAGAACAAAAGAATTTTATTAACCAGCAGCTTGGGCCTCAAATGGCATCAGCGGGT
TTTGGAAATGTCAAAATCATAGCTTTTGATCATAACTGCGACAATACTGCTTATCCAATAGATGTATTAAACAACAGCAG
TTATGTTGACGGTGCTGCGTTTCATTTGTATTTAGGAAATATTTCTGCAATGTCAACTGTAAAGACTCAAACAAACAAAA
ACGTTTATTTTACAGAACAATATACAGGTTCGGGAGGGAGTTTTAGCGGCGATTTTGGCTGGCACATGCAAAATGTAGTT
ATTGGAAGCACCAACAACTGGTCCAAAACAGTTTTAGAATGGAATGCTGCCAATAATTCTAGTTTAGGACCACGCACACC
AGGCGGATGCAACACATGTTTAGGTGCTATTACGGTTAATAACAGTACGAGTTATACCAGAAATGTGGCGTATTATATTA
TTGGTCAAATTTCTAAATATGTAAAACCGGGTGCAGTAAGAATTGGTTCTTCCAGCACAAGCGGCAGTATTTTATCAGTT
GGATTTAAAAATCCTGACGGATCTATCGCTCTTGTAGTATATAACACTTCCGGATCATCAAATACAATAAAAGTGGTTTC
GGGTTCATCAGCGTTTAATTATGCAGTTCCGGGTTCATCAGCAGTTACTTTTACCTGGGGAGCAGGAACACCGCCTCCAA
CTGGTTTTCCGGGATATTATAATATCATTTCAAGAAACAGTAATAAAGGACTTGACGTAGCAGATAATTCAACAACGAGC
GGCGGAAGAATTCAGCAATATGATATAACTAACGGCGGCGGAAATAACCAGCGTTGGAGATTTGTTTCTGACGGAGCCGG
CAATTATTACATTATAGTAAAATCAACCGGAATGTATCTGGCAGTTGAAAATAATGGAACAGCAAATGGACTAAAAGTAC
AGCAGAGAACTTTCTCTAATTCTAATGAATTTAAATGGACGGTTGAAAGTCTTGGTGGAGGATATTATAAAATTACGAAT
GTAAATACAGGTAAGTCTCTTGATGTTGAAAGTGTATCTACAGCAAATGGAGCTAATATTCAGGTTTGGGATTATACAGG
AGGATTAAATCAGCAATGGCAGTTTGTTCAGGTTGAGTCTACGGCAAAAAAAGCGTTATCTGTAAACCCTAAAGAAAATG
AAAATACAGCTGATATGGCTGTTTATATTGATGAAGTAAGCGATCATTTAAAAATTGAAACAAATCATGAAGGCACTGCC
GATGTAGAAATATTCAATATCAACGGACAAAGCGTGTTGAAACGAAATGTAAATTTTGTAAAAGGAAATCTTTCTGAAAT
TGAAGTTTCGAGACTTCCAAAAGGAGTTTATATTGTGAGAGTAAACGATGGAGCAGGGTCTTATTCTAAAAAAGTATTAA
AACAATAA

Upstream 100 bases:

>100_bases
AAAAATTTAACTATCTACAAACCTCAAAAACCACAAAAAAATGCACAAAACTACTCAAAAACCTACAAATCGAGTGAGAA
GCATAATGCAGGTCATTATC

Downstream 100 bases:

>100_bases
TTATCAATTAAGGGTTCAATTAGTAATTTTATATTGATGCTTAAAAGGCTGTCTAATTTTTTTAGGCAGCCTTTTATTTT
ATCAATTTATCCAATTAATT

Product: glucan endo-1,6-beta-glucosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 695; Mature: 695

Protein sequence:

>695_residues
MLLCINVSAQTVTPFITSGDQTRLLQQQGTVNFGTNSGTNPSTVTVNAGTTYQTMDGFGYTLTEGSAEVISGMAATQQNQ
LLNDLYNPNTGLNASVVRISIAASDLSSSSYSYNETSGDTNMNNFSLNGPDLTYLIPIIKKIQQINPNIKILATPWSAPR
WMKTNNSWIGGSLQTQYYAAYARYFVKYLQAMQAQGIPIWAITPQNEPENPHNEPSMLMNSTEQKNFINQQLGPQMASAG
FGNVKIIAFDHNCDNTAYPIDVLNNSSYVDGAAFHLYLGNISAMSTVKTQTNKNVYFTEQYTGSGGSFSGDFGWHMQNVV
IGSTNNWSKTVLEWNAANNSSLGPRTPGGCNTCLGAITVNNSTSYTRNVAYYIIGQISKYVKPGAVRIGSSSTSGSILSV
GFKNPDGSIALVVYNTSGSSNTIKVVSGSSAFNYAVPGSSAVTFTWGAGTPPPTGFPGYYNIISRNSNKGLDVADNSTTS
GGRIQQYDITNGGGNNQRWRFVSDGAGNYYIIVKSTGMYLAVENNGTANGLKVQQRTFSNSNEFKWTVESLGGGYYKITN
VNTGKSLDVESVSTANGANIQVWDYTGGLNQQWQFVQVESTAKKALSVNPKENENTADMAVYIDEVSDHLKIETNHEGTA
DVEIFNINGQSVLKRNVNFVKGNLSEIEVSRLPKGVYIVRVNDGAGSYSKKVLKQ

Sequences:

>Translated_695_residues
MLLCINVSAQTVTPFITSGDQTRLLQQQGTVNFGTNSGTNPSTVTVNAGTTYQTMDGFGYTLTEGSAEVISGMAATQQNQ
LLNDLYNPNTGLNASVVRISIAASDLSSSSYSYNETSGDTNMNNFSLNGPDLTYLIPIIKKIQQINPNIKILATPWSAPR
WMKTNNSWIGGSLQTQYYAAYARYFVKYLQAMQAQGIPIWAITPQNEPENPHNEPSMLMNSTEQKNFINQQLGPQMASAG
FGNVKIIAFDHNCDNTAYPIDVLNNSSYVDGAAFHLYLGNISAMSTVKTQTNKNVYFTEQYTGSGGSFSGDFGWHMQNVV
IGSTNNWSKTVLEWNAANNSSLGPRTPGGCNTCLGAITVNNSTSYTRNVAYYIIGQISKYVKPGAVRIGSSSTSGSILSV
GFKNPDGSIALVVYNTSGSSNTIKVVSGSSAFNYAVPGSSAVTFTWGAGTPPPTGFPGYYNIISRNSNKGLDVADNSTTS
GGRIQQYDITNGGGNNQRWRFVSDGAGNYYIIVKSTGMYLAVENNGTANGLKVQQRTFSNSNEFKWTVESLGGGYYKITN
VNTGKSLDVESVSTANGANIQVWDYTGGLNQQWQFVQVESTAKKALSVNPKENENTADMAVYIDEVSDHLKIETNHEGTA
DVEIFNINGQSVLKRNVNFVKGNLSEIEVSRLPKGVYIVRVNDGAGSYSKKVLKQ
>Mature_695_residues
MLLCINVSAQTVTPFITSGDQTRLLQQQGTVNFGTNSGTNPSTVTVNAGTTYQTMDGFGYTLTEGSAEVISGMAATQQNQ
LLNDLYNPNTGLNASVVRISIAASDLSSSSYSYNETSGDTNMNNFSLNGPDLTYLIPIIKKIQQINPNIKILATPWSAPR
WMKTNNSWIGGSLQTQYYAAYARYFVKYLQAMQAQGIPIWAITPQNEPENPHNEPSMLMNSTEQKNFINQQLGPQMASAG
FGNVKIIAFDHNCDNTAYPIDVLNNSSYVDGAAFHLYLGNISAMSTVKTQTNKNVYFTEQYTGSGGSFSGDFGWHMQNVV
IGSTNNWSKTVLEWNAANNSSLGPRTPGGCNTCLGAITVNNSTSYTRNVAYYIIGQISKYVKPGAVRIGSSSTSGSILSV
GFKNPDGSIALVVYNTSGSSNTIKVVSGSSAFNYAVPGSSAVTFTWGAGTPPPTGFPGYYNIISRNSNKGLDVADNSTTS
GGRIQQYDITNGGGNNQRWRFVSDGAGNYYIIVKSTGMYLAVENNGTANGLKVQQRTFSNSNEFKWTVESLGGGYYKITN
VNTGKSLDVESVSTANGANIQVWDYTGGLNQQWQFVQVESTAKKALSVNPKENENTADMAVYIDEVSDHLKIETNHEGTA
DVEIFNINGQSVLKRNVNFVKGNLSEIEVSRLPKGVYIVRVNDGAGSYSKKVLKQ

Specific function: Unknown

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ricin B-type lectin domain [H]

Homologues:

Organism=Homo sapiens, GI284807150, Length=433, Percent_Identity=27.0207852193995, Blast_Score=162, Evalue=1e-39,
Organism=Homo sapiens, GI54607043, Length=433, Percent_Identity=27.0207852193995, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI54607045, Length=433, Percent_Identity=27.0207852193995, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI54607047, Length=433, Percent_Identity=27.0207852193995, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI284807152, Length=387, Percent_Identity=27.390180878553, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17542884, Length=409, Percent_Identity=32.2738386308068, Blast_Score=184, Evalue=9e-47,
Organism=Caenorhabditis elegans, GI193204210, Length=437, Percent_Identity=31.8077803203661, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI115532472, Length=397, Percent_Identity=31.2342569269521, Blast_Score=177, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI115532470, Length=397, Percent_Identity=31.2342569269521, Blast_Score=177, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17539758, Length=459, Percent_Identity=26.1437908496732, Blast_Score=152, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI17539756, Length=459, Percent_Identity=25.9259259259259, Blast_Score=148, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI25151335, Length=350, Percent_Identity=27.4285714285714, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI21355305, Length=472, Percent_Identity=26.6949152542373, Blast_Score=154, Evalue=2e-37,
Organism=Drosophila melanogaster, GI161078544, Length=446, Percent_Identity=27.1300448430493, Blast_Score=141, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR008997
- InterPro:   IPR000772 [H]

Pfam domain/function: PF00652 Ricin_B_lectin [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 75082; Mature: 75082

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50231 RICIN_B_LECTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLCINVSAQTVTPFITSGDQTRLLQQQGTVNFGTNSGTNPSTVTVNAGTTYQTMDGFGY
CEEEEECCCCEECEEEECCCHHHHHHHCCCEEECCCCCCCCCEEEEECCCEEEECCCCCE
TLTEGSAEVISGMAATQQNQLLNDLYNPNTGLNASVVRISIAASDLSSSSYSYNETSGDT
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
NMNNFSLNGPDLTYLIPIIKKIQQINPNIKILATPWSAPRWMKTNNSWIGGSLQTQYYAA
CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCEECCCCCHHHHHH
YARYFVKYLQAMQAQGIPIWAITPQNEPENPHNEPSMLMNSTEQKNFINQQLGPQMASAG
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHCC
FGNVKIIAFDHNCDNTAYPIDVLNNSSYVDGAAFHLYLGNISAMSTVKTQTNKNVYFTEQ
CCCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEE
YTGSGGSFSGDFGWHMQNVVIGSTNNWSKTVLEWNAANNSSLGPRTPGGCNTCLGAITVN
ECCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEC
NSTSYTRNVAYYIIGQISKYVKPGAVRIGSSSTSGSILSVGFKNPDGSIALVVYNTSGSS
CCCCCCCEEEEEEEEHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCC
NTIKVVSGSSAFNYAVPGSSAVTFTWGAGTPPPTGFPGYYNIISRNSNKGLDVADNSTTS
CEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCC
GGRIQQYDITNGGGNNQRWRFVSDGAGNYYIIVKSTGMYLAVENNGTANGLKVQQRTFSN
CCEEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEECCCC
SNEFKWTVESLGGGYYKITNVNTGKSLDVESVSTANGANIQVWDYTGGLNQQWQFVQVES
CCCEEEEHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEC
TAKKALSVNPKENENTADMAVYIDEVSDHLKIETNHEGTADVEIFNINGQSVLKRNVNFV
HHHHHEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEECCCHHHHHCCCEEE
KGNLSEIEVSRLPKGVYIVRVNDGAGSYSKKVLKQ
ECCCCEEEHHHCCCCEEEEEECCCCCHHHHHHHCC
>Mature Secondary Structure
MLLCINVSAQTVTPFITSGDQTRLLQQQGTVNFGTNSGTNPSTVTVNAGTTYQTMDGFGY
CEEEEECCCCEECEEEECCCHHHHHHHCCCEEECCCCCCCCCEEEEECCCEEEECCCCCE
TLTEGSAEVISGMAATQQNQLLNDLYNPNTGLNASVVRISIAASDLSSSSYSYNETSGDT
EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
NMNNFSLNGPDLTYLIPIIKKIQQINPNIKILATPWSAPRWMKTNNSWIGGSLQTQYYAA
CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCEECCCCCHHHHHH
YARYFVKYLQAMQAQGIPIWAITPQNEPENPHNEPSMLMNSTEQKNFINQQLGPQMASAG
HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHCC
FGNVKIIAFDHNCDNTAYPIDVLNNSSYVDGAAFHLYLGNISAMSTVKTQTNKNVYFTEQ
CCCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEE
YTGSGGSFSGDFGWHMQNVVIGSTNNWSKTVLEWNAANNSSLGPRTPGGCNTCLGAITVN
ECCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEC
NSTSYTRNVAYYIIGQISKYVKPGAVRIGSSSTSGSILSVGFKNPDGSIALVVYNTSGSS
CCCCCCCEEEEEEEEHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCCCC
NTIKVVSGSSAFNYAVPGSSAVTFTWGAGTPPPTGFPGYYNIISRNSNKGLDVADNSTTS
CEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCC
GGRIQQYDITNGGGNNQRWRFVSDGAGNYYIIVKSTGMYLAVENNGTANGLKVQQRTFSN
CCEEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEECCCC
SNEFKWTVESLGGGYYKITNVNTGKSLDVESVSTANGANIQVWDYTGGLNQQWQFVQVES
CCCEEEEHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEC
TAKKALSVNPKENENTADMAVYIDEVSDHLKIETNHEGTADVEIFNINGQSVLKRNVNFV
HHHHHEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEEECCCHHHHHCCCEEE
KGNLSEIEVSRLPKGVYIVRVNDGAGSYSKKVLKQ
ECCCCEEEHHHCCCCEEEEEECCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA