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The map label for this gene is rpoE [C]

Identifier: 146299547

GI number: 146299547

Start: 2067070

End: 2067630

Strand: Direct

Name: rpoE [C]

Synonym: Fjoh_1787

Alternate gene names: 146299547

Gene position: 2067070-2067630 (Clockwise)

Preceding gene: 146299544

Following gene: 146299548

Centisome position: 33.9

GC content: 32.8

Gene sequence:

>561_bases
ATGAAAATTATTCATTTACATCAAGAAGAAACCAAAATCATAAAGCTGGCTGTCGAAAATAATCGACAGGCACAGCAGCA
GATTTACAGCAGGTTTTCTCCAAAAATGTTAAGTGTATGCCGGCAGTATATAAAGGACATTCATATGGCAGAAGATGTAA
TGATTACGGCTTTCATGAAAGTATTTACGAATCTAAAAAACTTTGAACACAAAGGAAGTTTTGAAGGCTGGATTCGAAGG
ATTATGGTTAACGAATGCATTTCGTATTTAAGAGTTCAGAAAAAAGTAAAATTTGCCGAAGATGAATTTTTTGTCGAAGA
AAGTTTCAATGAAATTGACAGTCAGTTTACAGTAGAACAAATTCAGTATTTAATAGATGCCCTGCCAGATGGTTATAAAA
TGGTTTTCAATTTATACGCCATAGAAGGTTATAAACACAATGAAATTGCCAAGATGCTAGGAATTAATGAAGGAACATCG
AAATCACAATTATCGCACGCCAGAAAAATGCTGCAAACACAAATTACTATTTTAAAAAAACAAGATAATGGAACCGAATA
A

Upstream 100 bases:

>100_bases
AGTTTAAAATTTTTTCCACCCTTCATGCAACCATTTTAGATCGACAATCGTCTATGCTGATAGAAGTCTTTTCTAAAACT
AAAAACCGAAAAGCGTATTA

Downstream 100 bases:

>100_bases
TTTTGAAAAGGATTTCCGTGAAAAGCTCAACCAGCGAAAAATTGAACCAAGCGAAAAAGCCTGGGATCGATTAGATGCTA
TGTTGAGTGTTGCCGAAGAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-W Factor; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigW; ECF Family RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-24 Subunit Rpoe; RNA Polymerase Factor Sigma C; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-24 Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit RpoE; Sigma-24 Factor FecI; Specialized Sigma Subunit Of RNA Polymerase; RNA Polymerase Sigma Factor Protein

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MKIIHLHQEETKIIKLAVENNRQAQQQIYSRFSPKMLSVCRQYIKDIHMAEDVMITAFMKVFTNLKNFEHKGSFEGWIRR
IMVNECISYLRVQKKVKFAEDEFFVEESFNEIDSQFTVEQIQYLIDALPDGYKMVFNLYAIEGYKHNEIAKMLGINEGTS
KSQLSHARKMLQTQITILKKQDNGTE

Sequences:

>Translated_186_residues
MKIIHLHQEETKIIKLAVENNRQAQQQIYSRFSPKMLSVCRQYIKDIHMAEDVMITAFMKVFTNLKNFEHKGSFEGWIRR
IMVNECISYLRVQKKVKFAEDEFFVEESFNEIDSQFTVEQIQYLIDALPDGYKMVFNLYAIEGYKHNEIAKMLGINEGTS
KSQLSHARKMLQTQITILKKQDNGTE
>Mature_186_residues
MKIIHLHQEETKIIKLAVENNRQAQQQIYSRFSPKMLSVCRQYIKDIHMAEDVMITAFMKVFTNLKNFEHKGSFEGWIRR
IMVNECISYLRVQKKVKFAEDEFFVEESFNEIDSQFTVEQIQYLIDALPDGYKMVFNLYAIEGYKHNEIAKMLGINEGTS
KSQLSHARKMLQTQITILKKQDNGTE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21924; Mature: 21924

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIHLHQEETKIIKLAVENNRQAQQQIYSRFSPKMLSVCRQYIKDIHMAEDVMITAFMK
CCEEEECCCCHHEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFTNLKNFEHKGSFEGWIRRIMVNECISYLRVQKKVKFAEDEFFVEESFNEIDSQFTVEQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQYLIDALPDGYKMVFNLYAIEGYKHNEIAKMLGINEGTSKSQLSHARKMLQTQITILKK
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
QDNGTE
CCCCCC
>Mature Secondary Structure
MKIIHLHQEETKIIKLAVENNRQAQQQIYSRFSPKMLSVCRQYIKDIHMAEDVMITAFMK
CCEEEECCCCHHEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFTNLKNFEHKGSFEGWIRRIMVNECISYLRVQKKVKFAEDEFFVEESFNEIDSQFTVEQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQYLIDALPDGYKMVFNLYAIEGYKHNEIAKMLGINEGTSKSQLSHARKMLQTQITILKK
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
QDNGTE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA