| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146299456
Identifier: 146299456
GI number: 146299456
Start: 1965015
End: 1967285
Strand: Direct
Name: 146299456
Synonym: Fjoh_1696
Alternate gene names: NA
Gene position: 1965015-1967285 (Clockwise)
Preceding gene: 146299455
Following gene: 146299457
Centisome position: 32.23
GC content: 32.28
Gene sequence:
>2271_bases GTGTCAAAATCTGTTATACTCTTTTTTTTATTCTGTTTTTCAAACATTTTTGCGCAGTCAAATATAAAGATCACAGGAAA TGTAAAATCTTCTGACAACCAGACTCTTGCAGGTGTCCATGTTTTATTTGAAATAAATCAAAAACAAAAACATGCAGTTA CCGACACTTTAGGTAACTTTTTTGAAAGTATTCCTGCAGGGGATATGGCTTTAACGATTAATCAGTTAGGTTTTACTTCA AAAACAATTTACTGCAGTGTTCAAAAGGACACCATGTTTTCTATTATTTTAGAAAAAGATATTGCTCAGTTAAAAGAAGT AATTATTTCAAATGATAAGAAAAACGGAATTAAAACCTTGTCAGGCGGAAAACTTTCTTTTAATCTAAAAGACCTAAACT CCGTTCCAACGCTTTTAGGAACAACAGATGTTATAAAACTTTTACAGCTAACGCCCGGAGTGCAAAATTCAGGCGATGCA AATGGTTATTTATACGTTAGGGGCGGCGATCCCGGACACAACGCGATTTTGTATAATGAAACGCCAATTTATGGAATGTC GCATTTACTGGGAATATTTCCTTTCTACAATACAGATCATATTAAAGATATAGAATTTGATAAATCAAGCTCAAATGCAA AATACGGCGGACGTTTGAGTTCTACAACGCTTTTAAATACCAATAAAAAAATACCTTCTGAATTCTCAATTCAGGGAAAT GCCGGAATTTTGGCTTCGCAATTAACATTAGCAGTTCCGATTAACGATAAAAACGGTTTCTATATTTCTGGCAGAAAAAC GTATATTGATGAAGTTGTGGGGCCGTTATTAAAATCAGATTCAGAAAACGATGTTCAGGATATGAAATATGGTTTTTCGG ATGCAAACTTTACTTTTTTATCTCAAATTTCTACAAAGAATTTATTTTCATTTGATGCCTTTTATAGTGGAGATAAATTG AAAGTTAAAGATGGAGATCTGGCACTTCAAACCAATTTAAAATGGAATAACTTTACAGTATCGCCATCTTTAACGACGAT ATTTTCTCCTAAAGTAAGCATGTCTAATTCTGTTTATTTTAGTCATTATTCTAATGATTTAGATATGGAACAGGCAGCGA TTCATTTTGGGGTTTCTTCTTATGTAAAGGATTTTGGGTTTGCAAATGCAGTTCGATTTTCGATTCATAATATTCCATTT GAATCAGGATTGCAATATGTTTATCACAATTTACAGCCTCAAAAAGTAAATGTAGAAAACCTGACAACGATTGATAATAA TTCACAAAGTGTGATTAATGCCAATGAAGCAGCAATTTTTGCAAACGCAAAACCCAAATTGTTTGAGAATGTAACCGCAG ATTTAGGTCTTCGAATTAATTATTACACTTCTGGAGCAAATTCGTATCTGCATTTTCAGCCGAGAGCGGTATTGAATTAT TATGCAAATGAAAAATATTCGTTTTATGCTTCTTACAACAGACAGTATCAATATTTGAGTTTAATTACAACTTCAAGCGT AGGTATCCCGACTGATTTTTGGATTGCAAGTTCGGATGGTATTAAGCCGCAGTCTTCAAATGAATTTTCAATTGGATCAA ACCAAAATATTACCAGAAATTTTTCTTCTTCTTTTGGAGGATTTTACCGTTCGATGAAAAATCTGCTCGAATACCCTTAT GGAATAACGCAGTTTAATGAAACTACAACTTTAAAAAATGATTTGTATGTGGGCGAAGGGAAAGCGTATGGATTTGAAAT GATGCTCAAAAAAAGCAACGGAAAATTTACGGGCTGGCTTAGTTATACCTTAAGCTGGTCTGAACGAAATTTTGATGAAT TAAATAACGGAAAAACATATTTTGCAAAGTATGACAGAAGGCATAGTCTTTCTGTAGTGGGAATGTACGATTTAAACGCA AAGTGGAATTTTGGAGTTACCCAGATATTTGGTTCCGGAAATCGATTTACAATGCCGACTTCCTGGTATTTTATAAACAA TAATCCGGTGAAAGAATATTCAGGATATAATAATGCTCAAATGCCAAATTATATTAGAACAGACATCTCTGCCAATTATT ATTTTATAAAAACAGCAAAAAAAGAAAGCGCATTAAATTTCTCTATTTACAATACTTTCAATATATCAAATCCTATTTAT GTGGTTTTAAATGTTAGAACTACTGATAATAAAAATGAAATATTAGTTACACAGGATAAAAAGGTTTTATATCGAATTTT GCCTTCAATAAGCTGGCGATTTAAATTTTAA
Upstream 100 bases:
>100_bases GTATTTGAAGAAATTGAAATAAGATTAAAACTAAACAATTATAACCTGATGTATTTGGGTTATAATTGTTTACTTTCGCA CTTTTCTTATTAAAATTTAC
Downstream 100 bases:
>100_bases ATTATGAAAAAGTATATCATTTTATTTTTTTCTTTTTTGCTCTTGAGTTGTTCTAATGATGATGTAAGCGTTCAAAAAAG CAAAGAATCTAAAATAGTGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Outer Membrane Protein; NB-Dependent Receptor; NB-Dependent Outer Membrane Receptor Protein; Nb-Dependent Receptor Plug; Nb-Dependent Receptor; NB Dependent/Ligand-Gated Channel; NB Dependent Receptor; NB Dependent Receptor Domain Protein; NB-Dependent Outer Membrane Receptor; NB Family Protein; NB-Dependent Receptor Plug Domain Protein; NB Dependent Receptor Domain-Containing Protein
Number of amino acids: Translated: 756; Mature: 755
Protein sequence:
>756_residues MSKSVILFFLFCFSNIFAQSNIKITGNVKSSDNQTLAGVHVLFEINQKQKHAVTDTLGNFFESIPAGDMALTINQLGFTS KTIYCSVQKDTMFSIILEKDIAQLKEVIISNDKKNGIKTLSGGKLSFNLKDLNSVPTLLGTTDVIKLLQLTPGVQNSGDA NGYLYVRGGDPGHNAILYNETPIYGMSHLLGIFPFYNTDHIKDIEFDKSSSNAKYGGRLSSTTLLNTNKKIPSEFSIQGN AGILASQLTLAVPINDKNGFYISGRKTYIDEVVGPLLKSDSENDVQDMKYGFSDANFTFLSQISTKNLFSFDAFYSGDKL KVKDGDLALQTNLKWNNFTVSPSLTTIFSPKVSMSNSVYFSHYSNDLDMEQAAIHFGVSSYVKDFGFANAVRFSIHNIPF ESGLQYVYHNLQPQKVNVENLTTIDNNSQSVINANEAAIFANAKPKLFENVTADLGLRINYYTSGANSYLHFQPRAVLNY YANEKYSFYASYNRQYQYLSLITTSSVGIPTDFWIASSDGIKPQSSNEFSIGSNQNITRNFSSSFGGFYRSMKNLLEYPY GITQFNETTTLKNDLYVGEGKAYGFEMMLKKSNGKFTGWLSYTLSWSERNFDELNNGKTYFAKYDRRHSLSVVGMYDLNA KWNFGVTQIFGSGNRFTMPTSWYFINNNPVKEYSGYNNAQMPNYIRTDISANYYFIKTAKKESALNFSIYNTFNISNPIY VVLNVRTTDNKNEILVTQDKKVLYRILPSISWRFKF
Sequences:
>Translated_756_residues MSKSVILFFLFCFSNIFAQSNIKITGNVKSSDNQTLAGVHVLFEINQKQKHAVTDTLGNFFESIPAGDMALTINQLGFTS KTIYCSVQKDTMFSIILEKDIAQLKEVIISNDKKNGIKTLSGGKLSFNLKDLNSVPTLLGTTDVIKLLQLTPGVQNSGDA NGYLYVRGGDPGHNAILYNETPIYGMSHLLGIFPFYNTDHIKDIEFDKSSSNAKYGGRLSSTTLLNTNKKIPSEFSIQGN AGILASQLTLAVPINDKNGFYISGRKTYIDEVVGPLLKSDSENDVQDMKYGFSDANFTFLSQISTKNLFSFDAFYSGDKL KVKDGDLALQTNLKWNNFTVSPSLTTIFSPKVSMSNSVYFSHYSNDLDMEQAAIHFGVSSYVKDFGFANAVRFSIHNIPF ESGLQYVYHNLQPQKVNVENLTTIDNNSQSVINANEAAIFANAKPKLFENVTADLGLRINYYTSGANSYLHFQPRAVLNY YANEKYSFYASYNRQYQYLSLITTSSVGIPTDFWIASSDGIKPQSSNEFSIGSNQNITRNFSSSFGGFYRSMKNLLEYPY GITQFNETTTLKNDLYVGEGKAYGFEMMLKKSNGKFTGWLSYTLSWSERNFDELNNGKTYFAKYDRRHSLSVVGMYDLNA KWNFGVTQIFGSGNRFTMPTSWYFINNNPVKEYSGYNNAQMPNYIRTDISANYYFIKTAKKESALNFSIYNTFNISNPIY VVLNVRTTDNKNEILVTQDKKVLYRILPSISWRFKF >Mature_755_residues SKSVILFFLFCFSNIFAQSNIKITGNVKSSDNQTLAGVHVLFEINQKQKHAVTDTLGNFFESIPAGDMALTINQLGFTSK TIYCSVQKDTMFSIILEKDIAQLKEVIISNDKKNGIKTLSGGKLSFNLKDLNSVPTLLGTTDVIKLLQLTPGVQNSGDAN GYLYVRGGDPGHNAILYNETPIYGMSHLLGIFPFYNTDHIKDIEFDKSSSNAKYGGRLSSTTLLNTNKKIPSEFSIQGNA GILASQLTLAVPINDKNGFYISGRKTYIDEVVGPLLKSDSENDVQDMKYGFSDANFTFLSQISTKNLFSFDAFYSGDKLK VKDGDLALQTNLKWNNFTVSPSLTTIFSPKVSMSNSVYFSHYSNDLDMEQAAIHFGVSSYVKDFGFANAVRFSIHNIPFE SGLQYVYHNLQPQKVNVENLTTIDNNSQSVINANEAAIFANAKPKLFENVTADLGLRINYYTSGANSYLHFQPRAVLNYY ANEKYSFYASYNRQYQYLSLITTSSVGIPTDFWIASSDGIKPQSSNEFSIGSNQNITRNFSSSFGGFYRSMKNLLEYPYG ITQFNETTTLKNDLYVGEGKAYGFEMMLKKSNGKFTGWLSYTLSWSERNFDELNNGKTYFAKYDRRHSLSVVGMYDLNAK WNFGVTQIFGSGNRFTMPTSWYFINNNPVKEYSGYNNAQMPNYIRTDISANYYFIKTAKKESALNFSIYNTFNISNPIYV VLNVRTTDNKNEILVTQDKKVLYRILPSISWRFKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85188; Mature: 85057
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSVILFFLFCFSNIFAQSNIKITGNVKSSDNQTLAGVHVLFEINQKQKHAVTDTLGNF CCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHH FESIPAGDMALTINQLGFTSKTIYCSVQKDTMFSIILEKDIAQLKEVIISNDKKNGIKTL HHHCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEE SGGKLSFNLKDLNSVPTLLGTTDVIKLLQLTPGVQNSGDANGYLYVRGGDPGHNAILYNE CCCEEEEEECCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECC TPIYGMSHLLGIFPFYNTDHIKDIEFDKSSSNAKYGGRLSSTTLLNTNKKIPSEFSIQGN CCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEECCEEEEECCCCCCCCEEECCC AGILASQLTLAVPINDKNGFYISGRKTYIDEVVGPLLKSDSENDVQDMKYGFSDANFTFL CCEEEEEEEEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEE SQISTKNLFSFDAFYSGDKLKVKDGDLALQTNLKWNNFTVSPSLTTIFSPKVSMSNSVYF EECCCCCEEEEEEEECCCEEEEECCCEEEEEECCCCCEEECCCEEEEECCCCCCCCCEEE SHYSNDLDMEQAAIHFGVSSYVKDFGFANAVRFSIHNIPFESGLQYVYHNLQPQKVNVEN EECCCCCCHHHHHHHHCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEECCCE LTTIDNNSQSVINANEAAIFANAKPKLFENVTADLGLRINYYTSGANSYLHFQPRAVLNY EEEECCCCCEEEECCCEEEEECCCCHHHHCCCCCCCEEEEEEECCCCCEEEECCHHHHHH YANEKYSFYASYNRQYQYLSLITTSSVGIPTDFWIASSDGIKPQSSNEFSIGSNQNITRN HCCCEEEEEEECCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCEEC FSSSFGGFYRSMKNLLEYPYGITQFNETTTLKNDLYVGEGKAYGFEMMLKKSNGKFTGWL HHHHHHHHHHHHHHHHHCCCCCEECCCCEEECCCEEEECCCCCCEEEEEEECCCCEEEEE SYTLSWSERNFDELNNGKTYFAKYDRRHSLSVVGMYDLNAKWNFGVTQIFGSGNRFTMPT EEEEEECCCCHHHCCCCEEEEEECCCCCCEEEEEEEECCCEECCCEEEEECCCCEEECCE SWYFINNNPVKEYSGYNNAQMPNYIRTDISANYYFIKTAKKESALNFSIYNTFNISNPIY EEEEECCCCHHHHCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCCCEE VVLNVRTTDNKNEILVTQDKKVLYRILPSISWRFKF EEEEEEECCCCCCEEEECCHHHHHHHHCCCEEEECC >Mature Secondary Structure SKSVILFFLFCFSNIFAQSNIKITGNVKSSDNQTLAGVHVLFEINQKQKHAVTDTLGNF CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHH FESIPAGDMALTINQLGFTSKTIYCSVQKDTMFSIILEKDIAQLKEVIISNDKKNGIKTL HHHCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEE SGGKLSFNLKDLNSVPTLLGTTDVIKLLQLTPGVQNSGDANGYLYVRGGDPGHNAILYNE CCCEEEEEECCCCCCCHHHCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECC TPIYGMSHLLGIFPFYNTDHIKDIEFDKSSSNAKYGGRLSSTTLLNTNKKIPSEFSIQGN CCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEECCEEEEECCCCCCCCEEECCC AGILASQLTLAVPINDKNGFYISGRKTYIDEVVGPLLKSDSENDVQDMKYGFSDANFTFL CCEEEEEEEEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEE SQISTKNLFSFDAFYSGDKLKVKDGDLALQTNLKWNNFTVSPSLTTIFSPKVSMSNSVYF EECCCCCEEEEEEEECCCEEEEECCCEEEEEECCCCCEEECCCEEEEECCCCCCCCCEEE SHYSNDLDMEQAAIHFGVSSYVKDFGFANAVRFSIHNIPFESGLQYVYHNLQPQKVNVEN EECCCCCCHHHHHHHHCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEECCCE LTTIDNNSQSVINANEAAIFANAKPKLFENVTADLGLRINYYTSGANSYLHFQPRAVLNY EEEECCCCCEEEECCCEEEEECCCCHHHHCCCCCCCEEEEEEECCCCCEEEECCHHHHHH YANEKYSFYASYNRQYQYLSLITTSSVGIPTDFWIASSDGIKPQSSNEFSIGSNQNITRN HCCCEEEEEEECCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCEEC FSSSFGGFYRSMKNLLEYPYGITQFNETTTLKNDLYVGEGKAYGFEMMLKKSNGKFTGWL HHHHHHHHHHHHHHHHHCCCCCEECCCCEEECCCEEEECCCCCCEEEEEEECCCCEEEEE SYTLSWSERNFDELNNGKTYFAKYDRRHSLSVVGMYDLNAKWNFGVTQIFGSGNRFTMPT EEEEEECCCCHHHCCCCEEEEEECCCCCCEEEEEEEECCCEECCCEEEEECCCCEEECCE SWYFINNNPVKEYSGYNNAQMPNYIRTDISANYYFIKTAKKESALNFSIYNTFNISNPIY EEEEECCCCHHHHCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCCCEE VVLNVRTTDNKNEILVTQDKKVLYRILPSISWRFKF EEEEEEECCCCCCEEEECCHHHHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA