Click here to switch to the map view.

The map label for this gene is deoC [H]

Identifier: 146299416

GI number: 146299416

Start: 1925831

End: 1926610

Strand: Direct

Name: deoC [H]

Synonym: Fjoh_1656

Alternate gene names: 146299416

Gene position: 1925831-1926610 (Clockwise)

Preceding gene: 146299415

Following gene: 146299417

Centisome position: 31.59

GC content: 34.1

Gene sequence:

>780_bases
ATGTACTTTTGCGCCATTCGATCTAACTTCTATATTATGAATGTTAAGCAGTACTTAGATTCAACTTATTTAAAAACAGC
TTCTCAGGCCGGAATTTCGGAAGAGGACAATGTTGTTGTAGTTAAAAATACAATCGAAGAAGCGATTACAGAAAGTTTTA
AGCTGATTATGATCAGGCCGGAATATGTGAGTCTGGCAAAAGACATGATCTTAAAGGCAAATTCGACTTTATTGGTTGGT
ACAGTAATAGATTTTCCGGAAGGAAAGTCAAGTTTAGAAACTAAAATTAAAGAAGCAAACGAAGCAATAGAAAACGGAGC
TGATGATTTAGATTTTGTTTGTAATTACGAAGCCTTTAAAAACGGAGATGTAGATTTAATAAAACAAGAAATCTTAATTG
GAACTCAAATAGGACTGGCGAACAACAAAACAGTAAAATGGATTATTGAAGTCGCAGCATTAACAGATAAAGAAATTATA
CAACTGTGCGCTTTAATAAAAAATGTTGTTATATCGAACTTTAAAGAAGAAGATTATGCTTCGGTATTTGTAAAATCATC
TACAGGTTTTTATAAAACCGAAAACAATCTGCCAAATGGAGCAACAATTCCTACTATAATTATAATGCTGGAAAATGCAT
CGCCTTTGCCAGTTAAGGCTGCAGGCGGAGTTCGTTCTTATGAAGACGCAGTAGAAATGATTCGTTTAGGAGTTAAGCGA
ATTGGGACTTCGGCAGCAAAAGCAATTGCAAACGGAGAAAATACCACAAATCAATATTAA

Upstream 100 bases:

>100_bases
AAAACAAATCGATAAAATATAAGAATATAATTACCCACTTCGGTGGGTTTTTTATTGGCAGAAAATCAGCTTTATAAAAC
AGTATTTTTTATGAATTATA

Downstream 100 bases:

>100_bases
ATAAAAGCCCCAAATTTACGTGAATAAGTTATTTTTATCTTTTATCATTTTACCATTATTTGTTTTTTCTCAGGAAACAA
ATATAAAACAAGGTTTTACT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MYFCAIRSNFYIMNVKQYLDSTYLKTASQAGISEEDNVVVVKNTIEEAITESFKLIMIRPEYVSLAKDMILKANSTLLVG
TVIDFPEGKSSLETKIKEANEAIENGADDLDFVCNYEAFKNGDVDLIKQEILIGTQIGLANNKTVKWIIEVAALTDKEII
QLCALIKNVVISNFKEEDYASVFVKSSTGFYKTENNLPNGATIPTIIIMLENASPLPVKAAGGVRSYEDAVEMIRLGVKR
IGTSAAKAIANGENTTNQY

Sequences:

>Translated_259_residues
MYFCAIRSNFYIMNVKQYLDSTYLKTASQAGISEEDNVVVVKNTIEEAITESFKLIMIRPEYVSLAKDMILKANSTLLVG
TVIDFPEGKSSLETKIKEANEAIENGADDLDFVCNYEAFKNGDVDLIKQEILIGTQIGLANNKTVKWIIEVAALTDKEII
QLCALIKNVVISNFKEEDYASVFVKSSTGFYKTENNLPNGATIPTIIIMLENASPLPVKAAGGVRSYEDAVEMIRLGVKR
IGTSAAKAIANGENTTNQY
>Mature_259_residues
MYFCAIRSNFYIMNVKQYLDSTYLKTASQAGISEEDNVVVVKNTIEEAITESFKLIMIRPEYVSLAKDMILKANSTLLVG
TVIDFPEGKSSLETKIKEANEAIENGADDLDFVCNYEAFKNGDVDLIKQEILIGTQIGLANNKTVKWIIEVAALTDKEII
QLCALIKNVVISNFKEEDYASVFVKSSTGFYKTENNLPNGATIPTIIIMLENASPLPVKAAGGVRSYEDAVEMIRLGVKR
IGTSAAKAIANGENTTNQY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 28503; Mature: 28503

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFCAIRSNFYIMNVKQYLDSTYLKTASQAGISEEDNVVVVKNTIEEAITESFKLIMIRP
CEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCEEEEEECC
EYVSLAKDMILKANSTLLVGTVIDFPEGKSSLETKIKEANEAIENGADDLDFVCNYEAFK
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHC
NGDVDLIKQEILIGTQIGLANNKTVKWIIEVAALTDKEIIQLCALIKNVVISNFKEEDYA
CCCHHHHHHHHHEEEEECCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCE
SVFVKSSTGFYKTENNLPNGATIPTIIIMLENASPLPVKAAGGVRSYEDAVEMIRLGVKR
EEEEECCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHHH
IGTSAAKAIANGENTTNQY
HCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MYFCAIRSNFYIMNVKQYLDSTYLKTASQAGISEEDNVVVVKNTIEEAITESFKLIMIRP
CEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCEEEEEECC
EYVSLAKDMILKANSTLLVGTVIDFPEGKSSLETKIKEANEAIENGADDLDFVCNYEAFK
HHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHC
NGDVDLIKQEILIGTQIGLANNKTVKWIIEVAALTDKEIIQLCALIKNVVISNFKEEDYA
CCCHHHHHHHHHEEEEECCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCE
SVFVKSSTGFYKTENNLPNGATIPTIIIMLENASPLPVKAAGGVRSYEDAVEMIRLGVKR
EEEEECCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHHH
IGTSAAKAIANGENTTNQY
HCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA