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The map label for this gene is rbsR [H]

Identifier: 146299375

GI number: 146299375

Start: 1863258

End: 1864283

Strand: Direct

Name: rbsR [H]

Synonym: Fjoh_1615

Alternate gene names: 146299375

Gene position: 1863258-1864283 (Clockwise)

Preceding gene: 146299368

Following gene: 146299378

Centisome position: 30.56

GC content: 32.85

Gene sequence:

>1026_bases
ATGAAAGCTAAAGCAACTCTAAAACAAATTGCGAAGGAACTAGGTGTTTCTGTGTCAACGGTGTCTAAAGCACTAAATGA
CAGTCCGGAAATTAGTGAGCAGACGAAGGTGAAGATTAAGGAGTATGCCAAACTCAAAAATTATAAGCCGAATGTTATTG
GTCTGAATTTAAAGAATCGTAAAACCAAAACCATTGGTGTAATTATACCTAATATATTGAACTCTTTTTTCGCAAAAGTT
TTTAGCGGAATCGAAAAAGTAGCCGATAAAAAAGGATATAATGTAATTACATGTATTTCTAATGAATCTTTGGAAAAAGA
AATTCATACGCTTGAAATGCTGAGCAACGGAACTATCGACGGATTTATTCTTTCGGTTTCTGAAGAAGCTCAAAAACTGC
AAGACTATAATCATTTCTCTGAAATAATTAACGATGGAACACCAATTGTAATGTTTGATCGAATTGCAGATGAAGTAGAC
TGCGATAAAGTTGTAGTAGATGATTTTGATTCTGCATTAAATTCAACACAACATTTAATTAATTTAGGATGTAAAAACAT
TGCTTTAATTTCTTCTGTAGATAATTTAAGTGTTGGAAAACTTAGAGCCGATGGGTATTTAAAAGCTTTAAAAGACAATA
ATATTTCAGTTAACGAAAAAATTATTCTTCGTACTGATTCTGAAGATGATATGAAAGCTAAAATTGATTCTATTTTTGAT
CATAAAATCGATGGAATTTTTGCTTTGGACGAAAATGATTCAGTTGCGGCTTTAAGAGTAAGTTTGAAAAAAGGATATAG
AGTGCCGGAAGATATTTCTATAATTGGTTTTGCAGATGGAATTCTGGCTTCAAGACGTTTATCGCCAAGTTTAACAACTG
TAAGCCAGCACGGAATTGAAATAGGAGAAGTTGCAGCGAAAAGACTAATCCAAAGACTGGAAGAACCGGAAGGCGAAACT
TCTGATTACGAAACGATCGTTATCAAAACGAAGCTAAAAGAAAGAGAATCTACAAGAAAAGTATAA

Upstream 100 bases:

>100_bases
ATTTCGAATAGGTGGCATAATTTCAAATACTGGTAGTTGTTTTTTGTTTTATTTTCGGTAATTCTACTATATTTGTATTA
ATTACATAAACTTTTATTAG

Downstream 100 bases:

>100_bases
ATAAAGAAAAACCCATCAGCAGAAACTGGTGGGTTTTTTATTTTATAATGAATAAGGGAATTTAGGATTTTTATACTTTT
TTAATTTTTCAAAAGGAACT

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKAKATLKQIAKELGVSVSTVSKALNDSPEISEQTKVKIKEYAKLKNYKPNVIGLNLKNRKTKTIGVIIPNILNSFFAKV
FSGIEKVADKKGYNVITCISNESLEKEIHTLEMLSNGTIDGFILSVSEEAQKLQDYNHFSEIINDGTPIVMFDRIADEVD
CDKVVVDDFDSALNSTQHLINLGCKNIALISSVDNLSVGKLRADGYLKALKDNNISVNEKIILRTDSEDDMKAKIDSIFD
HKIDGIFALDENDSVAALRVSLKKGYRVPEDISIIGFADGILASRRLSPSLTTVSQHGIEIGEVAAKRLIQRLEEPEGET
SDYETIVIKTKLKERESTRKV

Sequences:

>Translated_341_residues
MKAKATLKQIAKELGVSVSTVSKALNDSPEISEQTKVKIKEYAKLKNYKPNVIGLNLKNRKTKTIGVIIPNILNSFFAKV
FSGIEKVADKKGYNVITCISNESLEKEIHTLEMLSNGTIDGFILSVSEEAQKLQDYNHFSEIINDGTPIVMFDRIADEVD
CDKVVVDDFDSALNSTQHLINLGCKNIALISSVDNLSVGKLRADGYLKALKDNNISVNEKIILRTDSEDDMKAKIDSIFD
HKIDGIFALDENDSVAALRVSLKKGYRVPEDISIIGFADGILASRRLSPSLTTVSQHGIEIGEVAAKRLIQRLEEPEGET
SDYETIVIKTKLKERESTRKV
>Mature_341_residues
MKAKATLKQIAKELGVSVSTVSKALNDSPEISEQTKVKIKEYAKLKNYKPNVIGLNLKNRKTKTIGVIIPNILNSFFAKV
FSGIEKVADKKGYNVITCISNESLEKEIHTLEMLSNGTIDGFILSVSEEAQKLQDYNHFSEIINDGTPIVMFDRIADEVD
CDKVVVDDFDSALNSTQHLINLGCKNIALISSVDNLSVGKLRADGYLKALKDNNISVNEKIILRTDSEDDMKAKIDSIFD
HKIDGIFALDENDSVAALRVSLKKGYRVPEDISIIGFADGILASRRLSPSLTTVSQHGIEIGEVAAKRLIQRLEEPEGET
SDYETIVIKTKLKERESTRKV

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=345, Percent_Identity=28.4057971014493, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790369, Length=349, Percent_Identity=28.9398280802292, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790194, Length=344, Percent_Identity=28.4883720930233, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1789202, Length=295, Percent_Identity=26.4406779661017, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788474, Length=344, Percent_Identity=24.7093023255814, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786268, Length=316, Percent_Identity=24.6835443037975, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789068, Length=295, Percent_Identity=24.7457627118644, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI48994940, Length=319, Percent_Identity=26.6457680250784, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790715, Length=316, Percent_Identity=25.3164556962025, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786540, Length=315, Percent_Identity=25.7142857142857, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787580, Length=324, Percent_Identity=24.6913580246914, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787906, Length=330, Percent_Identity=23.3333333333333, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37760; Mature: 37760

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKATLKQIAKELGVSVSTVSKALNDSPEISEQTKVKIKEYAKLKNYKPNVIGLNLKNR
CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
KTKTIGVIIPNILNSFFAKVFSGIEKVADKKGYNVITCISNESLEKEIHTLEMLSNGTID
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
GFILSVSEEAQKLQDYNHFSEIINDGTPIVMFDRIADEVDCDKVVVDDFDSALNSTQHLI
EEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NLGCKNIALISSVDNLSVGKLRADGYLKALKDNNISVNEKIILRTDSEDDMKAKIDSIFD
HHCCCCEEEEECCCCCCCCEEECCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
HKIDGIFALDENDSVAALRVSLKKGYRVPEDISIIGFADGILASRRLSPSLTTVSQHGIE
HCCCCEEEECCCCCEEEEEEEHHHCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHCCCH
IGEVAAKRLIQRLEEPEGETSDYETIVIKTKLKERESTRKV
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHCCC
>Mature Secondary Structure
MKAKATLKQIAKELGVSVSTVSKALNDSPEISEQTKVKIKEYAKLKNYKPNVIGLNLKNR
CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC
KTKTIGVIIPNILNSFFAKVFSGIEKVADKKGYNVITCISNESLEKEIHTLEMLSNGTID
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
GFILSVSEEAQKLQDYNHFSEIINDGTPIVMFDRIADEVDCDKVVVDDFDSALNSTQHLI
EEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NLGCKNIALISSVDNLSVGKLRADGYLKALKDNNISVNEKIILRTDSEDDMKAKIDSIFD
HHCCCCEEEEECCCCCCCCEEECCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
HKIDGIFALDENDSVAALRVSLKKGYRVPEDISIIGFADGILASRRLSPSLTTVSQHGIE
HCCCCEEEECCCCCEEEEEEEHHHCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHCCCH
IGEVAAKRLIQRLEEPEGETSDYETIVIKTKLKERESTRKV
HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]