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The map label for this gene is bkdR [H]

Identifier: 146299280

GI number: 146299280

Start: 1754371

End: 1754832

Strand: Direct

Name: bkdR [H]

Synonym: Fjoh_1520

Alternate gene names: 146299280

Gene position: 1754371-1754832 (Clockwise)

Preceding gene: 146299278

Following gene: 146299281

Centisome position: 28.77

GC content: 34.63

Gene sequence:

>462_bases
ATGGAAAATTTAGATAAAACCGATTTACTGATCCTAAAATACCTTCAGGAAGACTGCAATATCAATACAAAAGATCTTGC
GAGTAAATTATTTCTGACGGTAACGCCTGTTTACGAGCGTATCAAAAGACTGGAAAGAGATGGTTACATAACAAAATATG
TAGCACTTTTGGATAAGAAAAAAATGAACCGCGGCATGACTGTTTTTTGTAATGTTCGTTTAAAAGAACACGCGAAAAAT
GTAGGAAGTAATTTTGTAAAAGATATTGTGGCGCTTCCAGAAATTATAGAATGTTACAATATTGCCGGCGATTACGATTT
TATGCTCAAAATATTGGTGCAGGATATGGCTAGCTATCAGGATTTTGTCATGAATAAGCTGTCAACCATTGAAAATATTG
GAAACACGAACAGTATTTTTGTAATGGGAGAAATCAAGCACAGCACGGCTCTCGAATTTTAA

Upstream 100 bases:

>100_bases
TTTGAATATTATTTCAGTAAAAAGTGTTTTTAAATATACTTTTTAAAGATTTAATTACTTTTAAGTTGTTTTAAATTGAC
TTTTAGCCGTAAAAAAAACT

Downstream 100 bases:

>100_bases
AACATTAAATTATTTATAAGGATCAATGGATTTTGGTTGAACAAAATCCTAAATAAAACGTATTTTTGAATTTTAGATGA
TAAATCTAAAATCATCCATC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MENLDKTDLLILKYLQEDCNINTKDLASKLFLTVTPVYERIKRLERDGYITKYVALLDKKKMNRGMTVFCNVRLKEHAKN
VGSNFVKDIVALPEIIECYNIAGDYDFMLKILVQDMASYQDFVMNKLSTIENIGNTNSIFVMGEIKHSTALEF

Sequences:

>Translated_153_residues
MENLDKTDLLILKYLQEDCNINTKDLASKLFLTVTPVYERIKRLERDGYITKYVALLDKKKMNRGMTVFCNVRLKEHAKN
VGSNFVKDIVALPEIIECYNIAGDYDFMLKILVQDMASYQDFVMNKLSTIENIGNTNSIFVMGEIKHSTALEF
>Mature_153_residues
MENLDKTDLLILKYLQEDCNINTKDLASKLFLTVTPVYERIKRLERDGYITKYVALLDKKKMNRGMTVFCNVRLKEHAKN
VGSNFVKDIVALPEIIECYNIAGDYDFMLKILVQDMASYQDFVMNKLSTIENIGNTNSIFVMGEIKHSTALEF

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=148, Percent_Identity=35.1351351351351, Blast_Score=116, Evalue=7e-28,
Organism=Escherichia coli, GI1787116, Length=150, Percent_Identity=35.3333333333333, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17659; Mature: 17659

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLDKTDLLILKYLQEDCNINTKDLASKLFLTVTPVYERIKRLERDGYITKYVALLDKK
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KMNRGMTVFCNVRLKEHAKNVGSNFVKDIVALPEIIECYNIAGDYDFMLKILVQDMASYQ
HHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DFVMNKLSTIENIGNTNSIFVMGEIKHSTALEF
HHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC
>Mature Secondary Structure
MENLDKTDLLILKYLQEDCNINTKDLASKLFLTVTPVYERIKRLERDGYITKYVALLDKK
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KMNRGMTVFCNVRLKEHAKNVGSNFVKDIVALPEIIECYNIAGDYDFMLKILVQDMASYQ
HHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
DFVMNKLSTIENIGNTNSIFVMGEIKHSTALEF
HHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]