| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is asd [H]
Identifier: 146299080
GI number: 146299080
Start: 1511642
End: 1512631
Strand: Direct
Name: asd [H]
Synonym: Fjoh_1320
Alternate gene names: 146299080
Gene position: 1511642-1512631 (Clockwise)
Preceding gene: 146299079
Following gene: 146299081
Centisome position: 24.79
GC content: 36.57
Gene sequence:
>990_bases ATGAGAATTGCAGTTGTAGGTGCTACCGGAATGGTTGGCGAAGTAATGCTTAAAGTTTTAGCAGAAAGAAATTTTCCTGT TACGGAATTAATTCCTGTTGCATCAGAAAGATCAGTTGGAAAAGAAATCGAATACAAAGGAACCAAATATAAAGTAGTAG GATTACAAACAGCTGTTGATATGAAAGCTGATATCGCTGTTTTTTCTGCAGGAGGAGATACATCTTTAGAATGGGCTCCA AAATTTGCTGCTGCCGGAACAACTGTTATCGACAACTCATCTGCATGGAGAATGGATCCGACTAAAAAATTAGTGGTTCC GGAAATTAATGCCTCTGTATTAACAAAAGAAGATAAAATTATTGCAAACCCAAACTGTTCTACTATTCAAATGGTATTGG CTTTGGCTCCTTTGCATAGAAAATACAACATTAAAAGAATCATTGTTTCTACTTACCAATCAATTACTGGAACTGGTGTA AAAGCAGTTAAACAATTAGAAAACGAATACGCAGGAATTCAGGGTGATATGGCTTACAAATATCCAATTCACCGAAATGC AATTCCACACTGCGATAGTTTTGAGGATAACGGATACACTAAAGAAGAAATGAAATTAGTTCGCGAAACTCAAAAAATTC TTGGTGACAATACCATTAGAGTTACTGCTACTGCAGTTCGTGTACCAGTAGTAGGCGGACACAGCGAAGCTGTAAACGTT GAGTTTACAAATGATTTTGATGTAAGTGAAGTTCGTGAAATTTTACACAATACGGATGGAGTAGTAGTACAGGATAATTT AGATACCTTTACATACCCAATGCCATTATATGCAGAAGGTAAAAATGATGTTTTTGTTGGAAGAATCCGTCGTGATGAAA GCCAGCCAAACACATTAAACATGTGGATCGTTGCTGATAACTTAAGAAAAGGCGCTGCAACAAACACGATTCAAATCGCT GAATATTTAATTCAGGCTGGTTTGGTATAA
Upstream 100 bases:
>100_bases ACAACATTTTGTTATTTTTTGTGAATCACCTTGCCAAGACTTTTATTATACTTATTTTTGCGATATAAATTAGATTAATT GATTATTTAAAAATATAAAA
Downstream 100 bases:
>100_bases TTGAGAGATTAAATAAAATTGTTATAAAGAGAAAACCGTAATTGCAGTAATGTAATTACGGTTTTTTTGTGTTTTATAAA TAGCTTATTTTGATAGTTTT
Product: aspartate-semialdehyde dehydrogenase
Products: NA
Alternate protein names: ASA dehydrogenase; ASADH [H]
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MRIAVVGATGMVGEVMLKVLAERNFPVTELIPVASERSVGKEIEYKGTKYKVVGLQTAVDMKADIAVFSAGGDTSLEWAP KFAAAGTTVIDNSSAWRMDPTKKLVVPEINASVLTKEDKIIANPNCSTIQMVLALAPLHRKYNIKRIIVSTYQSITGTGV KAVKQLENEYAGIQGDMAYKYPIHRNAIPHCDSFEDNGYTKEEMKLVRETQKILGDNTIRVTATAVRVPVVGGHSEAVNV EFTNDFDVSEVREILHNTDGVVVQDNLDTFTYPMPLYAEGKNDVFVGRIRRDESQPNTLNMWIVADNLRKGAATNTIQIA EYLIQAGLV
Sequences:
>Translated_329_residues MRIAVVGATGMVGEVMLKVLAERNFPVTELIPVASERSVGKEIEYKGTKYKVVGLQTAVDMKADIAVFSAGGDTSLEWAP KFAAAGTTVIDNSSAWRMDPTKKLVVPEINASVLTKEDKIIANPNCSTIQMVLALAPLHRKYNIKRIIVSTYQSITGTGV KAVKQLENEYAGIQGDMAYKYPIHRNAIPHCDSFEDNGYTKEEMKLVRETQKILGDNTIRVTATAVRVPVVGGHSEAVNV EFTNDFDVSEVREILHNTDGVVVQDNLDTFTYPMPLYAEGKNDVFVGRIRRDESQPNTLNMWIVADNLRKGAATNTIQIA EYLIQAGLV >Mature_329_residues MRIAVVGATGMVGEVMLKVLAERNFPVTELIPVASERSVGKEIEYKGTKYKVVGLQTAVDMKADIAVFSAGGDTSLEWAP KFAAAGTTVIDNSSAWRMDPTKKLVVPEINASVLTKEDKIIANPNCSTIQMVLALAPLHRKYNIKRIIVSTYQSITGTGV KAVKQLENEYAGIQGDMAYKYPIHRNAIPHCDSFEDNGYTKEEMKLVRETQKILGDNTIRVTATAVRVPVVGGHSEAVNV EFTNDFDVSEVREILHNTDGVVVQDNLDTFTYPMPLYAEGKNDVFVGRIRRDESQPNTLNMWIVADNLRKGAATNTIQIA EYLIQAGLV
Specific function: Unknown
COG id: COG0136
COG function: function code E; Aspartate-semialdehyde dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate-semialdehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788658, Length=336, Percent_Identity=34.5238095238095, Blast_Score=171, Evalue=6e-44, Organism=Escherichia coli, GI1789841, Length=356, Percent_Identity=26.4044943820225, Blast_Score=100, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6320362, Length=377, Percent_Identity=26.2599469496021, Blast_Score=73, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000319 - InterPro: IPR012080 - InterPro: IPR005986 - InterPro: IPR016040 - InterPro: IPR000534 - InterPro: IPR012280 [H]
Pfam domain/function: PF01118 Semialdhyde_dh; PF02774 Semialdhyde_dhC [H]
EC number: =1.2.1.11 [H]
Molecular weight: Translated: 36193; Mature: 36193
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIAVVGATGMVGEVMLKVLAERNFPVTELIPVASERSVGKEIEYKGTKYKVVGLQTAVD CEEEEEECCCHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCEEEECCCEEEEEEEEEEEC MKADIAVFSAGGDTSLEWAPKFAAAGTTVIDNSSAWRMDPTKKLVVPEINASVLTKEDKI CEEEEEEEECCCCCCCEECCCHHCCCCEEEECCCCEEECCCCEEEEECCCCEEEECCCCE IANPNCSTIQMVLALAPLHRKYNIKRIIVSTYQSITGTGVKAVKQLENEYAGIQGDMAYK EECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEE YPIHRNAIPHCDSFEDNGYTKEEMKLVRETQKILGDNTIRVTATAVRVPVVGGHSEAVNV CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCEEEE EFTNDFDVSEVREILHNTDGVVVQDNLDTFTYPMPLYAEGKNDVFVGRIRRDESQPNTLN EECCCCCHHHHHHHHHCCCCEEEECCCCCEECCCEEEECCCCCEEEEEEECCCCCCCEEE MWIVADNLRKGAATNTIQIAEYLIQAGLV EEEEECCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MRIAVVGATGMVGEVMLKVLAERNFPVTELIPVASERSVGKEIEYKGTKYKVVGLQTAVD CEEEEEECCCHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCEEEECCCEEEEEEEEEEEC MKADIAVFSAGGDTSLEWAPKFAAAGTTVIDNSSAWRMDPTKKLVVPEINASVLTKEDKI CEEEEEEEECCCCCCCEECCCHHCCCCEEEECCCCEEECCCCEEEEECCCCEEEECCCCE IANPNCSTIQMVLALAPLHRKYNIKRIIVSTYQSITGTGVKAVKQLENEYAGIQGDMAYK EECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEE YPIHRNAIPHCDSFEDNGYTKEEMKLVRETQKILGDNTIRVTATAVRVPVVGGHSEAVNV CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCEEEE EFTNDFDVSEVREILHNTDGVVVQDNLDTFTYPMPLYAEGKNDVFVGRIRRDESQPNTLN EECCCCCHHHHHHHHHCCCCEEEECCCCCEECCCEEEECCCCCEEEEEEECCCCCCCEEE MWIVADNLRKGAATNTIQIAEYLIQAGLV EEEEECCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]