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The map label for this gene is 146299035

Identifier: 146299035

GI number: 146299035

Start: 1457800

End: 1458384

Strand: Direct

Name: 146299035

Synonym: Fjoh_1275

Alternate gene names: NA

Gene position: 1457800-1458384 (Clockwise)

Preceding gene: 146299028

Following gene: 146299036

Centisome position: 23.91

GC content: 32.65

Gene sequence:

>585_bases
ATGGATAAAAACAAAATACATCCTGACCAAAAATATATTGATGGTCTTGCCGAAAATAATTCGCTGGTAATTCAGTCTAT
ATATAAAAAGTTTGTTCCTAAAGTCGTTATGTTTATTATGAACAATTCCGGCGATAGAGACCAGGCACAGGATGTAGTTC
AGGAAATATTGATTTTGCTTTTTAATCAGGCCAAAGCCAATTCGTTAAAACTAACCTGCCCTTTTGATGCTTATTTCTTT
TTATTGTGTAAAAGAAAATGGCTCAATGAACTGAAAAAAACATCTAATAAAGGGGTAACAATTATTGAAGACGTTTTATC
TATCAATGAATCTGCGCATGAGTTAATTGGTCAAACCGAACAATTTGATGAAAAACAAGAGCTTTTTGACACCATGTTTG
AGAAACTGGGAGACAAATGCAAAGAGCTTTTAAAACTGAGTTTTGAAATTAAATCGATGGAAGAAGTGGCCGAAAAACTA
AACGTAACGTATGGTTATGTCCGTAAGAAAAAATCATTATGCGTTGGTCAGTTAACACAGTGGATTCAGGAAGCAAAAAA
CTTTAAATCTTTAAAAAACAATTAG

Upstream 100 bases:

>100_bases
ATTTCTGTCTGCTTATATCAATTGAAATTGTTAATTGTTACCCATTTGATTGAAATTTAATTGAGATTCTTTTTAACTTT
ATCTGATTAAAAGTTTTTTT

Downstream 100 bases:

>100_bases
TCATGAACGAAGAACGTTACATATTATTTGATCAATATCTTCAGGGCGAATTAACTGCTGATGCTAAAAATGATTTTGAA
AAACAATTGTTGGAAGATCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MDKNKIHPDQKYIDGLAENNSLVIQSIYKKFVPKVVMFIMNNSGDRDQAQDVVQEILILLFNQAKANSLKLTCPFDAYFF
LLCKRKWLNELKKTSNKGVTIIEDVLSINESAHELIGQTEQFDEKQELFDTMFEKLGDKCKELLKLSFEIKSMEEVAEKL
NVTYGYVRKKKSLCVGQLTQWIQEAKNFKSLKNN

Sequences:

>Translated_194_residues
MDKNKIHPDQKYIDGLAENNSLVIQSIYKKFVPKVVMFIMNNSGDRDQAQDVVQEILILLFNQAKANSLKLTCPFDAYFF
LLCKRKWLNELKKTSNKGVTIIEDVLSINESAHELIGQTEQFDEKQELFDTMFEKLGDKCKELLKLSFEIKSMEEVAEKL
NVTYGYVRKKKSLCVGQLTQWIQEAKNFKSLKNN
>Mature_194_residues
MDKNKIHPDQKYIDGLAENNSLVIQSIYKKFVPKVVMFIMNNSGDRDQAQDVVQEILILLFNQAKANSLKLTCPFDAYFF
LLCKRKWLNELKKTSNKGVTIIEDVLSINESAHELIGQTEQFDEKQELFDTMFEKLGDKCKELLKLSFEIKSMEEVAEKL
NVTYGYVRKKKSLCVGQLTQWIQEAKNFKSLKNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22511; Mature: 22511

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNKIHPDQKYIDGLAENNSLVIQSIYKKFVPKVVMFIMNNSGDRDQAQDVVQEILILL
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FNQAKANSLKLTCPFDAYFFLLCKRKWLNELKKTSNKGVTIIEDVLSINESAHELIGQTE
HCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHCCHH
QFDEKQELFDTMFEKLGDKCKELLKLSFEIKSMEEVAEKLNVTYGYVRKKKSLCVGQLTQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
WIQEAKNFKSLKNN
HHHHHHHHHHHCCC
>Mature Secondary Structure
MDKNKIHPDQKYIDGLAENNSLVIQSIYKKFVPKVVMFIMNNSGDRDQAQDVVQEILILL
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FNQAKANSLKLTCPFDAYFFLLCKRKWLNELKKTSNKGVTIIEDVLSINESAHELIGQTE
HCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHCCHH
QFDEKQELFDTMFEKLGDKCKELLKLSFEIKSMEEVAEKLNVTYGYVRKKKSLCVGQLTQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
WIQEAKNFKSLKNN
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA