Click here to switch to the map view.

The map label for this gene is lktD [H]

Identifier: 146298924

GI number: 146298924

Start: 1312210

End: 1313349

Strand: Direct

Name: lktD [H]

Synonym: Fjoh_1163

Alternate gene names: 146298924

Gene position: 1312210-1313349 (Clockwise)

Preceding gene: 146298923

Following gene: 146298925

Centisome position: 21.52

GC content: 29.39

Gene sequence:

>1140_bases
ATGAATTTCAGTTCAGATCCAATACATACTCTTGAAAATCTTATTGCAAAAAACAAATCCAAGAGTTTTTCTATTTACTT
GATTGTTATTATAGCAATTCTAACTTTTTTGATATTACTGCCTATAATTAAGGTAGATATAAGTAGTCAAAGTCGCGGCA
TTATTCGTGGTAAAGCTGAAAATGTTCCCGTTTCAACGATTGTAAACGGGAGAATTAGCTGGATATTTTTAAAAAATAAT
GCTTTTGTAAAAAAAGGAGATACACTTTTAAAAATATCTAAAGAAAATCTGGAAAGTGATAAAAGAACTCAAGACACCTT
ATTAGTTTCTGTTCTTGCATTATTAAGAGACATTTCAAATCTTTTACAGAATAAAACAACACATCTACAAACTTCTACTG
CACGCGAAGATTTATTCAAATTCCAATCTGGAAAAAATGAACTTCAAAGTAAAATTTCACAAGCTAAAATAAATTATGAT
CGCAATAAAATTCTTTACGATAAAGATATTATTGCTAAGGCAGATTTTGAAAAACTTGAATATGAATTACGTTTAACAGA
ACAGGCAATGCAAAGTTTTATAAGTCAGCAAAAAGCAACTTGGGAAAATCAGAAAAGAGATTTAGAAGAACGTTTAAAAA
ACCTTAACGGAACGGTTTTTAAAATAAATGCAGAATCAAATAATTATGTTGTTACAGCTCCCATTTCGGGAACTATAGAA
AGTTTTTCAGGGATTCAAAAAGGCTCTTTTGTAAGCGCATCACAAACCATTGCGATAATTTCCTCAACAGACAATCTTAT
AGTCGAAAATAATGTTTCGCCCAATGATATTGGTTTGATAAAGAAAAACCAAAAAGTGAAGTTTCAGTTAGATGCTTTCA
ATTATAATCAATGGGGATTATTAGATGGAAAAGTAATCGACATTGATCATAATATTACGATACAGGGTGATCAGGCATTT
TTTAAAGTGCGATGTTCTCTAAACTCAAAAACTTTACAATTAAAATCAGGTGACAAAACTAACGTGTCAAAAGGAATGAC
CTTAACTACAAGATATATAATCACTAAAAGAAGTTTGTTTGATTTGCTGTTTGATAAAATTGACGATTGGTTAAACCCCA
AATTATCAAATAAAATATAA

Upstream 100 bases:

>100_bases
AATGAGAATAGCATTTTAATAAGACGATGCTTTGGTATACGCTAATAATTTTATAATATTCTCTTTATTTAATAAAGAGA
ATATTCTTTTTACCTTGAAT

Downstream 100 bases:

>100_bases
AATGGCTTCAATAAAAATAAAACAACATGATATTAAAGATTGTGGCGCTGCTTGTCTGGTTTCTATTGGGAACTATTTTA
AAGTTAATTTGCCCATAGCT

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MNFSSDPIHTLENLIAKNKSKSFSIYLIVIIAILTFLILLPIIKVDISSQSRGIIRGKAENVPVSTIVNGRISWIFLKNN
AFVKKGDTLLKISKENLESDKRTQDTLLVSVLALLRDISNLLQNKTTHLQTSTAREDLFKFQSGKNELQSKISQAKINYD
RNKILYDKDIIAKADFEKLEYELRLTEQAMQSFISQQKATWENQKRDLEERLKNLNGTVFKINAESNNYVVTAPISGTIE
SFSGIQKGSFVSASQTIAIISSTDNLIVENNVSPNDIGLIKKNQKVKFQLDAFNYNQWGLLDGKVIDIDHNITIQGDQAF
FKVRCSLNSKTLQLKSGDKTNVSKGMTLTTRYIITKRSLFDLLFDKIDDWLNPKLSNKI

Sequences:

>Translated_379_residues
MNFSSDPIHTLENLIAKNKSKSFSIYLIVIIAILTFLILLPIIKVDISSQSRGIIRGKAENVPVSTIVNGRISWIFLKNN
AFVKKGDTLLKISKENLESDKRTQDTLLVSVLALLRDISNLLQNKTTHLQTSTAREDLFKFQSGKNELQSKISQAKINYD
RNKILYDKDIIAKADFEKLEYELRLTEQAMQSFISQQKATWENQKRDLEERLKNLNGTVFKINAESNNYVVTAPISGTIE
SFSGIQKGSFVSASQTIAIISSTDNLIVENNVSPNDIGLIKKNQKVKFQLDAFNYNQWGLLDGKVIDIDHNITIQGDQAF
FKVRCSLNSKTLQLKSGDKTNVSKGMTLTTRYIITKRSLFDLLFDKIDDWLNPKLSNKI
>Mature_379_residues
MNFSSDPIHTLENLIAKNKSKSFSIYLIVIIAILTFLILLPIIKVDISSQSRGIIRGKAENVPVSTIVNGRISWIFLKNN
AFVKKGDTLLKISKENLESDKRTQDTLLVSVLALLRDISNLLQNKTTHLQTSTAREDLFKFQSGKNELQSKISQAKINYD
RNKILYDKDIIAKADFEKLEYELRLTEQAMQSFISQQKATWENQKRDLEERLKNLNGTVFKINAESNNYVVTAPISGTIE
SFSGIQKGSFVSASQTIAIISSTDNLIVENNVSPNDIGLIKKNQKVKFQLDAFNYNQWGLLDGKVIDIDHNITIQGDQAF
FKVRCSLNSKTLQLKSGDKTNVSKGMTLTTRYIITKRSLFDLLFDKIDDWLNPKLSNKI

Specific function: Involved in the transport of the Leukotoxin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003997
- InterPro:   IPR006143
- InterPro:   IPR006144
- InterPro:   IPR010129 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 42918; Mature: 42918

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSSDPIHTLENLIAKNKSKSFSIYLIVIIAILTFLILLPIIKVDISSQSRGIIRGKAE
CCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCC
NVPVSTIVNGRISWIFLKNNAFVKKGDTLLKISKENLESDKRTQDTLLVSVLALLRDISN
CCCEEEEECCEEEEEEEECCEEEECCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLQNKTTHLQTSTAREDLFKFQSGKNELQSKISQAKINYDRNKILYDKDIIAKADFEKLE
HHHCCCCEEECHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCHHHHH
YELRLTEQAMQSFISQQKATWENQKRDLEERLKNLNGTVFKINAESNNYVVTAPISGTIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCHH
SFSGIQKGSFVSASQTIAIISSTDNLIVENNVSPNDIGLIKKNQKVKFQLDAFNYNQWGL
HHCCCCCCCEECCCCEEEEEECCCCEEEECCCCCCCEEEEECCCEEEEEEEEECCCCCCC
LDGKVIDIDHNITIQGDQAFFKVRCSLNSKTLQLKSGDKTNVSKGMTLTTRYIITKRSLF
CCCEEEEECCEEEEECCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEHHHHHH
DLLFDKIDDWLNPKLSNKI
HHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNFSSDPIHTLENLIAKNKSKSFSIYLIVIIAILTFLILLPIIKVDISSQSRGIIRGKAE
CCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCC
NVPVSTIVNGRISWIFLKNNAFVKKGDTLLKISKENLESDKRTQDTLLVSVLALLRDISN
CCCEEEEECCEEEEEEEECCEEEECCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLQNKTTHLQTSTAREDLFKFQSGKNELQSKISQAKINYDRNKILYDKDIIAKADFEKLE
HHHCCCCEEECHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCHHHHH
YELRLTEQAMQSFISQQKATWENQKRDLEERLKNLNGTVFKINAESNNYVVTAPISGTIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCHH
SFSGIQKGSFVSASQTIAIISSTDNLIVENNVSPNDIGLIKKNQKVKFQLDAFNYNQWGL
HHCCCCCCCEECCCCEEEEEECCCCEEEECCCCCCCEEEEECCCEEEEEEEEECCCCCCC
LDGKVIDIDHNITIQGDQAFFKVRCSLNSKTLQLKSGDKTNVSKGMTLTTRYIITKRSLF
CCCEEEEECCEEEEECCCEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEHHHHHH
DLLFDKIDDWLNPKLSNKI
HHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3040588; 2914876; 2707120 [H]