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The map label for this gene is araD [H]

Identifier: 146298881

GI number: 146298881

Start: 1265710

End: 1266411

Strand: Direct

Name: araD [H]

Synonym: Fjoh_1120

Alternate gene names: 146298881

Gene position: 1265710-1266411 (Clockwise)

Preceding gene: 146298880

Following gene: 146298882

Centisome position: 20.76

GC content: 37.18

Gene sequence:

>702_bases
ATGAGTTCTCTTTATAAAGATTTAAAACAAGAATGTTACGAAGCCAACATGCAGTTAAATGCATTGAATTTGGTAGTGTA
CACTTTTGGAAATGTAAGTGCCGTAGACAGAAAAAATGGTGTTTTTGCCATTAAACCAAGCGGTGTTCCTTACGAAGATT
TAAAACCGGAAGATATTGTAATTGTCGATTTTGACAACAATGTAATCGAAGGCACAATGCGTCCGTCATCAGACACTAAA
ACGCATGCTTATTTATACAAACACTGGCCAAATATTGGAGGAGTTGCACATACACACGCAACCTATTCTGTGGCTTGGGC
ACAATCTCAATTGGATATTCCAATTTTCGGAACAACGCATGCCGATCATTTAACTGCTGACATTCCGTGTGCGCCACCAA
TGGCTGATTCTCTTATCGAAGGAAACTACGAACACAATACTGGAATTCAAATTCTGGATTGTTTCAAAGAAAAAAATCTT
TCTTATGAAGAAGTAGAAATGATTTTGATTGGAAATCATGGTCCATTTGCATGGGGAAAAAATGCAGCAAAAGCAGTTTA
TAACAGCAAGGTTCTGGAAGTTGTGGCCGAAATGGCATATCTGACTTTGCAAATAAACCCAAACGCGCCAAGATTAAAAG
ATTCATTAATAAAGAAACATTACAATCGTAAACACGGAAAAGATTCGTATTACGGACAGTAA

Upstream 100 bases:

>100_bases
TATTTCCCTCAGACAGATAAAGTAGAAGCATATCACAAACTGCTTTTAGCTTACGAACAATTAAGCGCTTTTGCAGATCC
AAACCTTAAAATATCGCAGC

Downstream 100 bases:

>100_bases
TGATTTTAGATTTTAGATTAAAGAAAATAGAATAAAGAACAAAGAGAAAAGATTTTCGTTAATCGTGGATTTTTAGACAA
AGAAAAACGATTTGACGATT

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSSLYKDLKQECYEANMQLNALNLVVYTFGNVSAVDRKNGVFAIKPSGVPYEDLKPEDIVIVDFDNNVIEGTMRPSSDTK
THAYLYKHWPNIGGVAHTHATYSVAWAQSQLDIPIFGTTHADHLTADIPCAPPMADSLIEGNYEHNTGIQILDCFKEKNL
SYEEVEMILIGNHGPFAWGKNAAKAVYNSKVLEVVAEMAYLTLQINPNAPRLKDSLIKKHYNRKHGKDSYYGQ

Sequences:

>Translated_233_residues
MSSLYKDLKQECYEANMQLNALNLVVYTFGNVSAVDRKNGVFAIKPSGVPYEDLKPEDIVIVDFDNNVIEGTMRPSSDTK
THAYLYKHWPNIGGVAHTHATYSVAWAQSQLDIPIFGTTHADHLTADIPCAPPMADSLIEGNYEHNTGIQILDCFKEKNL
SYEEVEMILIGNHGPFAWGKNAAKAVYNSKVLEVVAEMAYLTLQINPNAPRLKDSLIKKHYNRKHGKDSYYGQ
>Mature_232_residues
SSLYKDLKQECYEANMQLNALNLVVYTFGNVSAVDRKNGVFAIKPSGVPYEDLKPEDIVIVDFDNNVIEGTMRPSSDTKT
HAYLYKHWPNIGGVAHTHATYSVAWAQSQLDIPIFGTTHADHLTADIPCAPPMADSLIEGNYEHNTGIQILDCFKEKNLS
YEEVEMILIGNHGPFAWGKNAAKAVYNSKVLEVVAEMAYLTLQINPNAPRLKDSLIKKHYNRKHGKDSYYGQ

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=228, Percent_Identity=48.2456140350877, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=48.0519480519481, Blast_Score=233, Evalue=9e-63,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=45.021645021645, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1789164, Length=210, Percent_Identity=29.5238095238095, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 26093; Mature: 25962

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLYKDLKQECYEANMQLNALNLVVYTFGNVSAVDRKNGVFAIKPSGVPYEDLKPEDIV
CCHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCEE
IVDFDNNVIEGTMRPSSDTKTHAYLYKHWPNIGGVAHTHATYSVAWAQSQLDIPIFGTTH
EEECCCCEEECCCCCCCCCCCEEEEEEECCCCCCEEECCCEEEEEEECCCCCEEEEECCC
ADHLTADIPCAPPMADSLIEGNYEHNTGIQILDCFKEKNLSYEEVEMILIGNHGPFAWGK
CCCEEECCCCCCCHHHHHHCCCCCCCCCCCEEEHHHHCCCCHHHEEEEEEECCCCCCCCC
NAAKAVYNSKVLEVVAEMAYLTLQINPNAPRLKDSLIKKHYNRKHGKDSYYGQ
HHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SSLYKDLKQECYEANMQLNALNLVVYTFGNVSAVDRKNGVFAIKPSGVPYEDLKPEDIV
CHHHHHHHHHHHHCCCEEEEEEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCEE
IVDFDNNVIEGTMRPSSDTKTHAYLYKHWPNIGGVAHTHATYSVAWAQSQLDIPIFGTTH
EEECCCCEEECCCCCCCCCCCEEEEEEECCCCCCEEECCCEEEEEEECCCCCEEEEECCC
ADHLTADIPCAPPMADSLIEGNYEHNTGIQILDCFKEKNLSYEEVEMILIGNHGPFAWGK
CCCEEECCCCCCCHHHHHHCCCCCCCCCCCEEEHHHHCCCCHHHEEEEEEECCCCCCCCC
NAAKAVYNSKVLEVVAEMAYLTLQINPNAPRLKDSLIKKHYNRKHGKDSYYGQ
HHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA