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The map label for this gene is asdII [H]

Identifier: 146298879

GI number: 146298879

Start: 1262241

End: 1263785

Strand: Direct

Name: asdII [H]

Synonym: Fjoh_1118

Alternate gene names: 146298879

Gene position: 1262241-1263785 (Clockwise)

Preceding gene: 146298877

Following gene: 146298880

Centisome position: 20.7

GC content: 36.76

Gene sequence:

>1545_bases
ATGAAAAAAACACTACTACTATTGTTTGTTACAATTTGTATACAGACAATTTCTGCGCAGAAAGAACCAATAGTTATTAC
TATAAAAAATGATCCTGCCGCACCAACCATCAATAAAAATATTTACGGTCATTTTGCTGAACATTTAGGACGCTGTATAT
ACGGCGGATTTTTTGTTGGCGATACTTCTAAAATTCCAAATACAAACGGAGTCAGAAATGATGTTATTAAAGCCTTAAAA
GATTTAAAAATTCCAAATTTAAGATGGCCGGGAGGCTGTTTTGCTGATACCTATCACTGGAAAGACGGAATTGGTCCAAA
AGAACAAAGACCTACAATTGTAAATCAATGGTGGGGAGGCGTAACAGAAGATAATAGTTTTGGAACTCATGACTTTTTAA
ATCTATGTGAAGTTCTGGGGGCAGAACCTTATTTATCCGGCAATGTAGGAAGCGGAACAGTTCAGGAATTTGCCGACTGG
ATTCAGTATGCCAATTTTGGAGGCAAAAGCCCAATGAGTGATCTGCGTAAAAAAAACGGAAGAACAGAACCATGGAAAGT
TAAATTCTGGGGAATTGGAAATGAAGCCTGGGGCTGCGGCGGTAACATGACAGCAGAATACTATGCAAACGAATACCGCA
AGTTTGCCACTTTTATGGCAGACTGGAATAATACAGGCGGTATAAATCGTATTGCTTCGGGAGCCAACAGCAGTGACTAT
AACTGGACGGAAGTTTTAATGAAAAATATTCCGCTTAATATGCTTGGCGGAGTTGGGGTTCATCATTATTCTGTAATTGA
CTGGAATAAAAAAGGAGATGCGGTTAATTTTTCGGAAGAGCAATATTTTAAAACCATGAAAGAGGCTTTAAAAATGGAAG
AGCTCGTAACGAAGCATGCTGCAGTAATGGATAAATACGATCCTGAGAAAAAAGTAGCAATGGTAGTTGATGAATGGGGC
GGATGGTATGATGTAGAAAAAGGAACAAATCCGGGATTTTTATATCAGCAAAATACCATTAGAGATGCAGTTTTGGCTGG
AGCAACACTTAATATTTTTAATAATCATGCAGACAGGGTTCGAATGGCAAATTTGGCTCAGTGCGTAAACGTGCTTCAAG
CAGTAATCCTGACTGATAAAACCAAAATGATCTTAACACCAACCTATCACGTTATGCAAATGTACAATGTGCATCAGGAT
GCGAAACTGCTGCCAATAAATTTCAGTTCGCCATTATATACATTTAAAGATCAAACGCTTCCGGCAGTTTCGGCTTCGGC
TTCAAAAGATAAAAACGGTGTTGTACATATTTCATTGGTAAATGTGGATGCAAAAAGTAAACATAAAATCGAAATTGATA
CGAAAGATTTGGGTGTGAAAAATTTTACTGCCCATATTATTACTTCATCGAAATTGCAGGATTTTAATTCTTTTGAGAAT
CCAAATAAAATCAGTCCTGCAGCATTTAAAGATTTTGATATGAAAAAAGGAAAATTAGAGATCAATTTACCTCCTTTTTC
AGTTTTGGTTTTAGAAGGAAAATAA

Upstream 100 bases:

>100_bases
ACAAACACTTATTTTGATTATGTATTAGAAAAAACAAAAAACAATAAAAATTATAACTAACCAGCCTTACTTTTCTAAAA
GTCACCAACCACGATAGACT

Downstream 100 bases:

>100_bases
TTTAAAAAAAGAGAAAAAATCATATAAAATATAGTTAGAAAAGCAGGCTGCATTTTACCGTTTTAAGCGTAAAGATGAAA
TAATCGCATTAAAATAAATG

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase 2 [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MKKTLLLLFVTICIQTISAQKEPIVITIKNDPAAPTINKNIYGHFAEHLGRCIYGGFFVGDTSKIPNTNGVRNDVIKALK
DLKIPNLRWPGGCFADTYHWKDGIGPKEQRPTIVNQWWGGVTEDNSFGTHDFLNLCEVLGAEPYLSGNVGSGTVQEFADW
IQYANFGGKSPMSDLRKKNGRTEPWKVKFWGIGNEAWGCGGNMTAEYYANEYRKFATFMADWNNTGGINRIASGANSSDY
NWTEVLMKNIPLNMLGGVGVHHYSVIDWNKKGDAVNFSEEQYFKTMKEALKMEELVTKHAAVMDKYDPEKKVAMVVDEWG
GWYDVEKGTNPGFLYQQNTIRDAVLAGATLNIFNNHADRVRMANLAQCVNVLQAVILTDKTKMILTPTYHVMQMYNVHQD
AKLLPINFSSPLYTFKDQTLPAVSASASKDKNGVVHISLVNVDAKSKHKIEIDTKDLGVKNFTAHIITSSKLQDFNSFEN
PNKISPAAFKDFDMKKGKLEINLPPFSVLVLEGK

Sequences:

>Translated_514_residues
MKKTLLLLFVTICIQTISAQKEPIVITIKNDPAAPTINKNIYGHFAEHLGRCIYGGFFVGDTSKIPNTNGVRNDVIKALK
DLKIPNLRWPGGCFADTYHWKDGIGPKEQRPTIVNQWWGGVTEDNSFGTHDFLNLCEVLGAEPYLSGNVGSGTVQEFADW
IQYANFGGKSPMSDLRKKNGRTEPWKVKFWGIGNEAWGCGGNMTAEYYANEYRKFATFMADWNNTGGINRIASGANSSDY
NWTEVLMKNIPLNMLGGVGVHHYSVIDWNKKGDAVNFSEEQYFKTMKEALKMEELVTKHAAVMDKYDPEKKVAMVVDEWG
GWYDVEKGTNPGFLYQQNTIRDAVLAGATLNIFNNHADRVRMANLAQCVNVLQAVILTDKTKMILTPTYHVMQMYNVHQD
AKLLPINFSSPLYTFKDQTLPAVSASASKDKNGVVHISLVNVDAKSKHKIEIDTKDLGVKNFTAHIITSSKLQDFNSFEN
PNKISPAAFKDFDMKKGKLEINLPPFSVLVLEGK
>Mature_514_residues
MKKTLLLLFVTICIQTISAQKEPIVITIKNDPAAPTINKNIYGHFAEHLGRCIYGGFFVGDTSKIPNTNGVRNDVIKALK
DLKIPNLRWPGGCFADTYHWKDGIGPKEQRPTIVNQWWGGVTEDNSFGTHDFLNLCEVLGAEPYLSGNVGSGTVQEFADW
IQYANFGGKSPMSDLRKKNGRTEPWKVKFWGIGNEAWGCGGNMTAEYYANEYRKFATFMADWNNTGGINRIASGANSSDY
NWTEVLMKNIPLNMLGGVGVHHYSVIDWNKKGDAVNFSEEQYFKTMKEALKMEELVTKHAAVMDKYDPEKKVAMVVDEWG
GWYDVEKGTNPGFLYQQNTIRDAVLAGATLNIFNNHADRVRMANLAQCVNVLQAVILTDKTKMILTPTYHVMQMYNVHQD
AKLLPINFSSPLYTFKDQTLPAVSASASKDKNGVVHISLVNVDAKSKHKIEIDTKDLGVKNFTAHIITSSKLQDFNSFEN
PNKISPAAFKDFDMKKGKLEINLPPFSVLVLEGK

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR013780
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 57502; Mature: 57502

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLLLFVTICIQTISAQKEPIVITIKNDPAAPTINKNIYGHFAEHLGRCIYGGFFVG
CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEC
DTSKIPNTNGVRNDVIKALKDLKIPNLRWPGGCFADTYHWKDGIGPKEQRPTIVNQWWGG
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
VTEDNSFGTHDFLNLCEVLGAEPYLSGNVGSGTVQEFADWIQYANFGGKSPMSDLRKKNG
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCC
RTEPWKVKFWGIGNEAWGCGGNMTAEYYANEYRKFATFMADWNNTGGINRIASGANSSDY
CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
NWTEVLMKNIPLNMLGGVGVHHYSVIDWNKKGDAVNFSEEQYFKTMKEALKMEELVTKHA
CHHHHHHHHCCHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AVMDKYDPEKKVAMVVDEWGGWYDVEKGTNPGFLYQQNTIRDAVLAGATLNIFNNHADRV
HHHHCCCCCCEEEEEEECCCCEEECCCCCCCCEEEECCHHHHHHHCCCEEEECCCCHHHH
RMANLAQCVNVLQAVILTDKTKMILTPTYHVMQMYNVHQDAKLLPINFSSPLYTFKDQTL
HHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCC
PAVSASASKDKNGVVHISLVNVDAKSKHKIEIDTKDLGVKNFTAHIITSSKLQDFNSFEN
CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECHHHCCCCCEEEEEEECHHHHHHHCCCC
PNKISPAAFKDFDMKKGKLEINLPPFSVLVLEGK
CCCCCCCHHCCCCCCCCEEEEECCCEEEEEEECC
>Mature Secondary Structure
MKKTLLLLFVTICIQTISAQKEPIVITIKNDPAAPTINKNIYGHFAEHLGRCIYGGFFVG
CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEC
DTSKIPNTNGVRNDVIKALKDLKIPNLRWPGGCFADTYHWKDGIGPKEQRPTIVNQWWGG
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
VTEDNSFGTHDFLNLCEVLGAEPYLSGNVGSGTVQEFADWIQYANFGGKSPMSDLRKKNG
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCC
RTEPWKVKFWGIGNEAWGCGGNMTAEYYANEYRKFATFMADWNNTGGINRIASGANSSDY
CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
NWTEVLMKNIPLNMLGGVGVHHYSVIDWNKKGDAVNFSEEQYFKTMKEALKMEELVTKHA
CHHHHHHHHCCHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AVMDKYDPEKKVAMVVDEWGGWYDVEKGTNPGFLYQQNTIRDAVLAGATLNIFNNHADRV
HHHHCCCCCCEEEEEEECCCCEEECCCCCCCCEEEECCHHHHHHHCCCEEEECCCCHHHH
RMANLAQCVNVLQAVILTDKTKMILTPTYHVMQMYNVHQDAKLLPINFSSPLYTFKDQTL
HHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCC
PAVSASASKDKNGVVHISLVNVDAKSKHKIEIDTKDLGVKNFTAHIITSSKLQDFNSFEN
CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEECHHHCCCCCEEEEEEECHHHHHHHCCCC
PNKISPAAFKDFDMKKGKLEINLPPFSVLVLEGK
CCCCCCCHHCCCCCCCCEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA