BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is yecC [C]

Identifier: 146298811

GI number: 146298811

Start: 1194439

End: 1195134

Strand: Direct

Name: yecC [C]

Synonym: Fjoh_1050

Alternate gene names: 146298811

Gene position: 1194439-1195134 (Clockwise)

Preceding gene: 146298810

Following gene: 146298812

Centisome position: 19.59

GC content: 32.9

Gene sequence:

>696_bases
ATGATACAAGTAAATCAACTATCAAAAAAATATAACGGAACTACAGTTTTGAATATTAACAATCTTGAAATCCCAAAAGG
ACAAAGTTTTGGATTAGTGGGAAATAACGGAGCAGGAAAAACCACTTTTTTTAGTCTGCTGTTAGACCTTATTCAACCAA
CTACAGGATACGTAAAAAGCAATGATATTCAGGTAAATACAAGTGAAAACTGGAAATCTTTTACAGGTTCATTTTTAGAT
GAAAGTTTCTTGATAGGATACTTAACACCAGAGGAATATTTTTATTTTATTGGAGATCTTCGCCATCAAAACAAAGCCGA
TATTGATGCATTACTGGCTAAGCACGAAGAATTTTTTAACGGAGAAATTTTAAACAACAAAAAATACCTTCGCGATTTAT
CTAAAGGAAATCAGAAAAAAGTGGGCATAATTGCGACCTTAATTGGTAACCCTGAAGTTGTAATTTTAGACGAACCTTTT
GCCAATTTAGACCCAACAACAGTAAGCCGTTTAAAGAAAATTATTAATGAATTAGCTGATGATCCAAATGTTACTGTTTT
GGTTTCAAGCCACGATTTACAACACACGGTCGAAGTTTGTGATCGAATTGTTGCACTCAACAAAGGCGAAATTGTAAAGG
ATATTCAAACATCAAAAGAAACCTTACAAGAACTCGAATCGTTTTTTGCGGTTTAA

Upstream 100 bases:

>100_bases
GAAAAAAGATATAAAATTGAAAAATACAGTACAATAAGTGCTTATAAACAAAAGAGTTAATTAGATAATTAATCTAAAAT
AAAAAATCTACAACTATACC

Downstream 100 bases:

>100_bases
GTTTCTATATTACAAAAAGAAGCGTATTTTTACCCGTCTTTATACTAAAAATACTTTTTAGAAGTTAATGCTTTAAAATC
AGTTCTATTGAAAAAGAATA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MIQVNQLSKKYNGTTVLNINNLEIPKGQSFGLVGNNGAGKTTFFSLLLDLIQPTTGYVKSNDIQVNTSENWKSFTGSFLD
ESFLIGYLTPEEYFYFIGDLRHQNKADIDALLAKHEEFFNGEILNNKKYLRDLSKGNQKKVGIIATLIGNPEVVILDEPF
ANLDPTTVSRLKKIINELADDPNVTVLVSSHDLQHTVEVCDRIVALNKGEIVKDIQTSKETLQELESFFAV

Sequences:

>Translated_231_residues
MIQVNQLSKKYNGTTVLNINNLEIPKGQSFGLVGNNGAGKTTFFSLLLDLIQPTTGYVKSNDIQVNTSENWKSFTGSFLD
ESFLIGYLTPEEYFYFIGDLRHQNKADIDALLAKHEEFFNGEILNNKKYLRDLSKGNQKKVGIIATLIGNPEVVILDEPF
ANLDPTTVSRLKKIINELADDPNVTVLVSSHDLQHTVEVCDRIVALNKGEIVKDIQTSKETLQELESFFAV
>Mature_231_residues
MIQVNQLSKKYNGTTVLNINNLEIPKGQSFGLVGNNGAGKTTFFSLLLDLIQPTTGYVKSNDIQVNTSENWKSFTGSFLD
ESFLIGYLTPEEYFYFIGDLRHQNKADIDALLAKHEEFFNGEILNNKKYLRDLSKGNQKKVGIIATLIGNPEVVILDEPF
ANLDPTTVSRLKKIINELADDPNVTVLVSSHDLQHTVEVCDRIVALNKGEIVKDIQTSKETLQELESFFAV

Specific function: Probably Part Of A Binding-Protein-Dependent Transport System Yeccs For An Amino Acid. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG4152

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=29.4930875576037, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=29.4930875576037, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27262624, Length=199, Percent_Identity=25.1256281407035, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI27262626, Length=199, Percent_Identity=25.1256281407035, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI153792144, Length=191, Percent_Identity=26.7015706806283, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=238, Percent_Identity=28.9915966386555, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI27436953, Length=219, Percent_Identity=26.027397260274, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI21536376, Length=215, Percent_Identity=26.9767441860465, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=25.1207729468599, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI27477115, Length=215, Percent_Identity=25.1162790697674, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=28.0373831775701, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI31657092, Length=194, Percent_Identity=26.2886597938144, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI150417984, Length=218, Percent_Identity=27.0642201834862, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI171184400, Length=204, Percent_Identity=28.4313725490196, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI255708477, Length=201, Percent_Identity=28.3582089552239, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=27.5700934579439, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789593, Length=229, Percent_Identity=30.5676855895196, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789864, Length=229, Percent_Identity=27.9475982532751, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI87081709, Length=218, Percent_Identity=27.5229357798165, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081782, Length=215, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=23.2558139534884, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI48994943, Length=220, Percent_Identity=26.3636363636364, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=23.7442922374429, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787089, Length=243, Percent_Identity=27.1604938271605, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790544, Length=240, Percent_Identity=24.5833333333333, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=24.5283018867925, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=212, Percent_Identity=25.4716981132075, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082267, Length=229, Percent_Identity=23.1441048034935, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790190, Length=247, Percent_Identity=26.7206477732794, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787500, Length=206, Percent_Identity=22.3300970873786, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=24.2424242424242, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788540, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788165, Length=207, Percent_Identity=25.6038647342995, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786703, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=23.9819004524887, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788210, Length=214, Percent_Identity=26.6355140186916, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=26.7942583732057, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=26.0663507109005, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787792, Length=235, Percent_Identity=26.8085106382979, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787712, Length=210, Percent_Identity=20.952380952381, Blast_Score=63, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=222, Percent_Identity=29.2792792792793, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17565586, Length=194, Percent_Identity=28.8659793814433, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71983523, Length=236, Percent_Identity=27.5423728813559, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=236, Percent_Identity=27.5423728813559, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=236, Percent_Identity=27.5423728813559, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115534520, Length=224, Percent_Identity=27.2321428571429, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193208177, Length=204, Percent_Identity=25.9803921568627, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=228, Percent_Identity=26.3157894736842, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6319856, Length=210, Percent_Identity=30.4761904761905, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24666092, Length=213, Percent_Identity=28.169014084507, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24648314, Length=213, Percent_Identity=26.2910798122066, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=29.3814432989691, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=29.3814432989691, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=25.7009345794392, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=25.7009345794392, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24643674, Length=209, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=26.605504587156, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85725262, Length=182, Percent_Identity=27.4725274725275, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24650853, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650855, Length=190, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85726357, Length=229, Percent_Identity=27.5109170305677, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281362751, Length=196, Percent_Identity=26.530612244898, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25842; Mature: 25842

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQVNQLSKKYNGTTVLNINNLEIPKGQSFGLVGNNGAGKTTFFSLLLDLIQPTTGYVKS
CCCHHHHHHHCCCEEEEEECCEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEC
NDIQVNTSENWKSFTGSFLDESFLIGYLTPEEYFYFIGDLRHQNKADIDALLAKHEEFFN
CCEEEECCCCHHHHHHHHCCCCEEEEEECHHHHEEEEHHHCCCCCHHHHHHHHHHHHHCC
GEILNNKKYLRDLSKGNQKKVGIIATLIGNPEVVILDEPFANLDPTTVSRLKKIINELAD
CEEECCHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
DPNVTVLVSSHDLQHTVEVCDRIVALNKGEIVKDIQTSKETLQELESFFAV
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIQVNQLSKKYNGTTVLNINNLEIPKGQSFGLVGNNGAGKTTFFSLLLDLIQPTTGYVKS
CCCHHHHHHHCCCEEEEEECCEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEC
NDIQVNTSENWKSFTGSFLDESFLIGYLTPEEYFYFIGDLRHQNKADIDALLAKHEEFFN
CCEEEECCCCHHHHHHHHCCCCEEEEEECHHHHEEEEHHHCCCCCHHHHHHHHHHHHHCC
GEILNNKKYLRDLSKGNQKKVGIIATLIGNPEVVILDEPFANLDPTTVSRLKKIINELAD
CEEECCHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
DPNVTVLVSSHDLQHTVEVCDRIVALNKGEIVKDIQTSKETLQELESFFAV
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]