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The map label for this gene is yhgF [C]

Identifier: 146298782

GI number: 146298782

Start: 1164226

End: 1166349

Strand: Direct

Name: yhgF [C]

Synonym: Fjoh_1021

Alternate gene names: 146298782

Gene position: 1164226-1166349 (Clockwise)

Preceding gene: 146298780

Following gene: 146298785

Centisome position: 19.1

GC content: 36.49

Gene sequence:

>2124_bases
ATGACTAATATTCAATTCATTGCCAAGTCTGTTCAGGCACCGGCAGTCAGTATTCAAAACACAGTAAAATTACTAGAGGA
AGATTGTACGATTCCGTTTATTTCCCGATACCGAAAAGACGCTACCGGAAATCTTGATGAAACTGTAATTGAGCAGATTG
CGAAACTTCAAAAAGATTATGATACGCTTATAAAACGTAAAGAAGCCGTTTTAAAATCAATTGAAGAGCAAAAAGCACTT
ACGCCAGAATTGAAGAAAAAAATTGAAGAAAGTTTTGATTTACAAGAAATTGAAGATTTTTACCTTCCATATAAAAAGAA
GAAAAAAACAAAAGCCGATGTGGCGCGCGAATTTGGTCTTGAACCTTTGGCAAAACTGATTATATCTGAAAGTGACGCTG
ATATCGATTTTATTTCGACACAATACATTAATGAAAATGTTATTAACGAAGAAGCCGCTATTCAAGGCGCAAGAGATATT
GTAGCAGAATGGATTAACGAAAATATTTACGTTCGTAAACAATTAAGAAGATTGTTTCAACGTAAAGCGACAATCACAAC
AAAAGTGGTTAAAAAGAAAGCAGAGGAAGAAGGCGCACAAAAATTCAACCAATATTTTGATTGGGAAGAGCCTTTAACAA
AAGCGCCGGCACACCGTTTATTAGCAATGTTACGTGCAGAAAATGAAGGTTTTATTAAAATGAAAATCGATGTTGATATC
GACGATGCCTACGATGTTATTGACGAAATTATCATTAAAAAGCAAAATAATTCAACAGCTCATTTGCAATTAGCAATTGA
AGATAGTTATAAACGTTTATTGAATCCGGCAATTGGAAATGAAACCCTGCAGGAAGCAAAAGCAAAAGCCGATGCTAATT
CTATTCAGGTTTTTGCTAACAATTTAGGACAGTTATTATTAGCGCCACCGTTGGGAGAAAAACGTATTTTGGCAATTGAC
CCAGGATTTAGAAGCGGTTGTAAAGTGGTTTGTCTGGACGAAAAAGGCGATTTATTATACAACGAAACGATTTATCCACA
TGCGCCGCAAAATGAGGAATCGATGGCGATCAAGAAAATTCGTTCGATGGTAAATGCATATCAAATTGATGCCATTTCTA
TTGGGAACGGAACGGCTTCTCGCGAAACTGAATTTTTCATCAAAAAAATCGCGTTCGACAAGCCAGTTCAGGTTTTTGTG
GTTTCTGAGGCAGGAGCTTCGGTATATTCAGCTTCAAAAATTGCGAGAGAAGAATTTCCGAATTATGATGTAACAGTTCG
TGGATCAGTTTCTATTGGAAGAAGACTTTCAGATCCGTTGGCCGAATTGGTAAAAATTGACCCAAAAGCAATTGGAGTAG
GACAGTATCAGCACGATGTTGATCAGACAAAACTAAAAGAAGAATTGGACAGTACAGTAATTCGCTGCGTGAACTCGGTT
GGAATTAACATTAACACAGCAAGTAAACATTTACTAAGCTATGTGAGTGGAATTGGGGAGAAGCTGGCCGAAAACATTGT
ACAATACCGTTCTGAAAACGGACCTTTTGAAGACAGAAAACAGCTTAAGAAAGTACCGCGTTTAGGAGATAAAGCTTATC
AGCAGGGAGCAGCGTTTATTAGAATTACAAATGCTAAAAATCCGCTGGATAATTCGGCTGTACACCCAGAGGCTTATCCA
GTTGTTGAAAAGATGGCAAAAGATTTGAATATTTCTTTAAACGACTTAATTGCTAATAAAGAGAAAACAGCCCTTATTAA
GCCTGAAAAGTATGTAACACCTGAAATTGGTTTACTTACGCTGAAAGACATCATAAAAGAGCTTGAAAAGCCTGGATTAG
ACCCAAGAAAGTCTGCTAAGGTTTTTGAATTTGATGCAAATGTAAAATCAATCAAAGATTTGAAAACAGGAATGATTCTT
CCGGGAATTGTTAATAACATCACCAACTTTGGCTGTTTTGTTGACATCGGAATCAAAGAAAGCGGATTAGTGCATATTTC
GCAGTTAAAAGCCGGCTTTGTAAGCGACGTAAACGAAGTGGTTAAATTGCATCAACATGTTGATGTTAAGGTTACTGAAG
TTGACGAAGATAGAAAGAGAATTCAATTGACAATGATTTTATAA

Upstream 100 bases:

>100_bases
ACAAAGATATTATTTTAGCCAAATGTTTGATTAATTTACCAATTCGTTTTAACAAGTAAATTATATCAACTTATAATTAA
GAATTTATTTCATTAAAAGT

Downstream 100 bases:

>100_bases
AAATTCCAAAACTGGAATAATAAAAAAACTCCCAAATTACATTCGTAATTTGGGAGTTTCTATTTTTAGGATTATTTCAA
AATCACTTTTTTGGTTATGC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 707; Mature: 706

Protein sequence:

>707_residues
MTNIQFIAKSVQAPAVSIQNTVKLLEEDCTIPFISRYRKDATGNLDETVIEQIAKLQKDYDTLIKRKEAVLKSIEEQKAL
TPELKKKIEESFDLQEIEDFYLPYKKKKKTKADVAREFGLEPLAKLIISESDADIDFISTQYINENVINEEAAIQGARDI
VAEWINENIYVRKQLRRLFQRKATITTKVVKKKAEEEGAQKFNQYFDWEEPLTKAPAHRLLAMLRAENEGFIKMKIDVDI
DDAYDVIDEIIIKKQNNSTAHLQLAIEDSYKRLLNPAIGNETLQEAKAKADANSIQVFANNLGQLLLAPPLGEKRILAID
PGFRSGCKVVCLDEKGDLLYNETIYPHAPQNEESMAIKKIRSMVNAYQIDAISIGNGTASRETEFFIKKIAFDKPVQVFV
VSEAGASVYSASKIAREEFPNYDVTVRGSVSIGRRLSDPLAELVKIDPKAIGVGQYQHDVDQTKLKEELDSTVIRCVNSV
GININTASKHLLSYVSGIGEKLAENIVQYRSENGPFEDRKQLKKVPRLGDKAYQQGAAFIRITNAKNPLDNSAVHPEAYP
VVEKMAKDLNISLNDLIANKEKTALIKPEKYVTPEIGLLTLKDIIKELEKPGLDPRKSAKVFEFDANVKSIKDLKTGMIL
PGIVNNITNFGCFVDIGIKESGLVHISQLKAGFVSDVNEVVKLHQHVDVKVTEVDEDRKRIQLTMIL

Sequences:

>Translated_707_residues
MTNIQFIAKSVQAPAVSIQNTVKLLEEDCTIPFISRYRKDATGNLDETVIEQIAKLQKDYDTLIKRKEAVLKSIEEQKAL
TPELKKKIEESFDLQEIEDFYLPYKKKKKTKADVAREFGLEPLAKLIISESDADIDFISTQYINENVINEEAAIQGARDI
VAEWINENIYVRKQLRRLFQRKATITTKVVKKKAEEEGAQKFNQYFDWEEPLTKAPAHRLLAMLRAENEGFIKMKIDVDI
DDAYDVIDEIIIKKQNNSTAHLQLAIEDSYKRLLNPAIGNETLQEAKAKADANSIQVFANNLGQLLLAPPLGEKRILAID
PGFRSGCKVVCLDEKGDLLYNETIYPHAPQNEESMAIKKIRSMVNAYQIDAISIGNGTASRETEFFIKKIAFDKPVQVFV
VSEAGASVYSASKIAREEFPNYDVTVRGSVSIGRRLSDPLAELVKIDPKAIGVGQYQHDVDQTKLKEELDSTVIRCVNSV
GININTASKHLLSYVSGIGEKLAENIVQYRSENGPFEDRKQLKKVPRLGDKAYQQGAAFIRITNAKNPLDNSAVHPEAYP
VVEKMAKDLNISLNDLIANKEKTALIKPEKYVTPEIGLLTLKDIIKELEKPGLDPRKSAKVFEFDANVKSIKDLKTGMIL
PGIVNNITNFGCFVDIGIKESGLVHISQLKAGFVSDVNEVVKLHQHVDVKVTEVDEDRKRIQLTMIL
>Mature_706_residues
TNIQFIAKSVQAPAVSIQNTVKLLEEDCTIPFISRYRKDATGNLDETVIEQIAKLQKDYDTLIKRKEAVLKSIEEQKALT
PELKKKIEESFDLQEIEDFYLPYKKKKKTKADVAREFGLEPLAKLIISESDADIDFISTQYINENVINEEAAIQGARDIV
AEWINENIYVRKQLRRLFQRKATITTKVVKKKAEEEGAQKFNQYFDWEEPLTKAPAHRLLAMLRAENEGFIKMKIDVDID
DAYDVIDEIIIKKQNNSTAHLQLAIEDSYKRLLNPAIGNETLQEAKAKADANSIQVFANNLGQLLLAPPLGEKRILAIDP
GFRSGCKVVCLDEKGDLLYNETIYPHAPQNEESMAIKKIRSMVNAYQIDAISIGNGTASRETEFFIKKIAFDKPVQVFVV
SEAGASVYSASKIAREEFPNYDVTVRGSVSIGRRLSDPLAELVKIDPKAIGVGQYQHDVDQTKLKEELDSTVIRCVNSVG
ININTASKHLLSYVSGIGEKLAENIVQYRSENGPFEDRKQLKKVPRLGDKAYQQGAAFIRITNAKNPLDNSAVHPEAYPV
VEKMAKDLNISLNDLIANKEKTALIKPEKYVTPEIGLLTLKDIIKELEKPGLDPRKSAKVFEFDANVKSIKDLKTGMILP
GIVNNITNFGCFVDIGIKESGLVHISQLKAGFVSDVNEVVKLHQHVDVKVTEVDEDRKRIQLTMIL

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=787, Percent_Identity=31.3850063532402, Blast_Score=348, Evalue=1e-95,
Organism=Homo sapiens, GI27597090, Length=193, Percent_Identity=30.5699481865285, Blast_Score=80, Evalue=7e-15,
Organism=Escherichia coli, GI87082262, Length=732, Percent_Identity=44.2622950819672, Blast_Score=582, Evalue=1e-167,
Organism=Caenorhabditis elegans, GI17511129, Length=748, Percent_Identity=30.0802139037433, Blast_Score=243, Evalue=3e-64,
Organism=Caenorhabditis elegans, GI17552892, Length=502, Percent_Identity=22.1115537848606, Blast_Score=86, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6321552, Length=721, Percent_Identity=22.6074895977809, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI62484314, Length=753, Percent_Identity=30.9428950863214, Blast_Score=358, Evalue=1e-98,
Organism=Drosophila melanogaster, GI24640080, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 79415; Mature: 79284

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIQFIAKSVQAPAVSIQNTVKLLEEDCTIPFISRYRKDATGNLDETVIEQIAKLQKDY
CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DTLIKRKEAVLKSIEEQKALTPELKKKIEESFDLQEIEDFYLPYKKKKKTKADVAREFGL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCH
EPLAKLIISESDADIDFISTQYINENVINEEAAIQGARDIVAEWINENIYVRKQLRRLFQ
HHHHHHHHCCCCCCCEEHHHHHHCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RKATITTKVVKKKAEEEGAQKFNQYFDWEEPLTKAPAHRLLAMLRAENEGFIKMKIDVDI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHCCCCCEEEEEEEECC
DDAYDVIDEIIIKKQNNSTAHLQLAIEDSYKRLLNPAIGNETLQEAKAKADANSIQVFAN
CHHHHHHHHHHEECCCCCCEEEEEEEEHHHHHHHCHHCCHHHHHHHHHHCCCHHHHHHHH
NLGQLLLAPPLGEKRILAIDPGFRSGCKVVCLDEKGDLLYNETIYPHAPQNEESMAIKKI
CCCCEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHH
RSMVNAYQIDAISIGNGTASRETEFFIKKIAFDKPVQVFVVSEAGASVYSASKIAREEFP
HHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
NYDVTVRGSVSIGRRLSDPLAELVKIDPKAIGVGQYQHDVDQTKLKEELDSTVIRCVNSV
CCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GININTASKHLLSYVSGIGEKLAENIVQYRSENGPFEDRKQLKKVPRLGDKAYQQGAAFI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCEEE
RITNAKNPLDNSAVHPEAYPVVEKMAKDLNISLNDLIANKEKTALIKPEKYVTPEIGLLT
EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH
LKDIIKELEKPGLDPRKSAKVFEFDANVKSIKDLKTGMILPGIVNNITNFGCFVDIGIKE
HHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCC
SGLVHISQLKAGFVSDVNEVVKLHQHVDVKVTEVDEDRKRIQLTMIL
CCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEC
>Mature Secondary Structure 
TNIQFIAKSVQAPAVSIQNTVKLLEEDCTIPFISRYRKDATGNLDETVIEQIAKLQKDY
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DTLIKRKEAVLKSIEEQKALTPELKKKIEESFDLQEIEDFYLPYKKKKKTKADVAREFGL
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCH
EPLAKLIISESDADIDFISTQYINENVINEEAAIQGARDIVAEWINENIYVRKQLRRLFQ
HHHHHHHHCCCCCCCEEHHHHHHCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RKATITTKVVKKKAEEEGAQKFNQYFDWEEPLTKAPAHRLLAMLRAENEGFIKMKIDVDI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHCCCCCEEEEEEEECC
DDAYDVIDEIIIKKQNNSTAHLQLAIEDSYKRLLNPAIGNETLQEAKAKADANSIQVFAN
CHHHHHHHHHHEECCCCCCEEEEEEEEHHHHHHHCHHCCHHHHHHHHHHCCCHHHHHHHH
NLGQLLLAPPLGEKRILAIDPGFRSGCKVVCLDEKGDLLYNETIYPHAPQNEESMAIKKI
CCCCEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHH
RSMVNAYQIDAISIGNGTASRETEFFIKKIAFDKPVQVFVVSEAGASVYSASKIAREEFP
HHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
NYDVTVRGSVSIGRRLSDPLAELVKIDPKAIGVGQYQHDVDQTKLKEELDSTVIRCVNSV
CCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GININTASKHLLSYVSGIGEKLAENIVQYRSENGPFEDRKQLKKVPRLGDKAYQQGAAFI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCEEE
RITNAKNPLDNSAVHPEAYPVVEKMAKDLNISLNDLIANKEKTALIKPEKYVTPEIGLLT
EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH
LKDIIKELEKPGLDPRKSAKVFEFDANVKSIKDLKTGMILPGIVNNITNFGCFVDIGIKE
HHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCC
SGLVHISQLKAGFVSDVNEVVKLHQHVDVKVTEVDEDRKRIQLTMIL
CCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]