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The map label for this gene is rnpA [H]

Identifier: 146298731

GI number: 146298731

Start: 1085518

End: 1085916

Strand: Direct

Name: rnpA [H]

Synonym: Fjoh_0970

Alternate gene names: 146298731

Gene position: 1085518-1085916 (Clockwise)

Preceding gene: 146298727

Following gene: 146298732

Centisome position: 17.8

GC content: 34.59

Gene sequence:

>399_bases
ATGAACTTCACATACCCTAAAAATGAACGCTTAAAGAGCAAAACAACGATTGGATTACTGTTTTCTGAAGGGAAATCGGT
TTCAAAATATCCGCTTCGTTTGGTTTACCGTCAGGCGGAAGAAGCATATCAGGGAAATACTAAAGTGGGCGTTTCGGTTT
CTAAGAAATACTTTAAAAAAGCAGTTGATAGAAATTATTTCAAAAGAGTTTTACGAGAAACTTACAGGCTTAACAAACAT
CTGCTTCTCGATAATCTCGATAAGCCGTATTCTTTCATGCTTTTTTATCAGTCAAAAGACCGATTGTCTTATGAAGAAAT
TAATACTAAAACAATTCAGCTGTTTGAGAAATTTGTACTGCAGATTAACAAACCCGCAGATTCTGAAAAAGAGAACTAA

Upstream 100 bases:

>100_bases
AGTAAATATATTTTTAGCGGTATAAAATTTGAAAACAATAACCGTTTTTATGGTTTAATTGTACCTTTGCCCTTGAAATT
GCAACTTTTTTCTGAATTAA

Downstream 100 bases:

>100_bases
GCCCTGACTCTCAAAAGGTAAGATAATTAATCAGATTAGATAAAAAAATCGTAGTTTTAGCTTTAAATTGAAATTTTATG
CGAAATATTTTCTTTTTGTC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MNFTYPKNERLKSKTTIGLLFSEGKSVSKYPLRLVYRQAEEAYQGNTKVGVSVSKKYFKKAVDRNYFKRVLRETYRLNKH
LLLDNLDKPYSFMLFYQSKDRLSYEEINTKTIQLFEKFVLQINKPADSEKEN

Sequences:

>Translated_132_residues
MNFTYPKNERLKSKTTIGLLFSEGKSVSKYPLRLVYRQAEEAYQGNTKVGVSVSKKYFKKAVDRNYFKRVLRETYRLNKH
LLLDNLDKPYSFMLFYQSKDRLSYEEINTKTIQLFEKFVLQINKPADSEKEN
>Mature_132_residues
MNFTYPKNERLKSKTTIGLLFSEGKSVSKYPLRLVYRQAEEAYQGNTKVGVSVSKKYFKKAVDRNYFKRVLRETYRLNKH
LLLDNLDKPYSFMLFYQSKDRLSYEEINTKTIQLFEKFVLQINKPADSEKEN

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 15740; Mature: 15740

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTYPKNERLKSKTTIGLLFSEGKSVSKYPLRLVYRQAEEAYQGNTKVGVSVSKKYFKK
CCCCCCCCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
AVDRNYFKRVLRETYRLNKHLLLDNLDKPYSFMLFYQSKDRLSYEEINTKTIQLFEKFVL
HHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
QINKPADSEKEN
HCCCCCCCCCCC
>Mature Secondary Structure
MNFTYPKNERLKSKTTIGLLFSEGKSVSKYPLRLVYRQAEEAYQGNTKVGVSVSKKYFKK
CCCCCCCCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHH
AVDRNYFKRVLRETYRLNKHLLLDNLDKPYSFMLFYQSKDRLSYEEINTKTIQLFEKFVL
HHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
QINKPADSEKEN
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA