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The map label for this gene is rlpA [C]

Identifier: 146298501

GI number: 146298501

Start: 817012

End: 817503

Strand: Direct

Name: rlpA [C]

Synonym: Fjoh_0738

Alternate gene names: 146298501

Gene position: 817012-817503 (Clockwise)

Preceding gene: 146298500

Following gene: 146298503

Centisome position: 13.4

GC content: 35.57

Gene sequence:

>492_bases
ATGAGTAAAAAAAACATTATTCTCAGCACATTAACAATAACTTTTTTAAGTTGTTTTACCTACGTTATAAGCCAGACCAA
ACCAGTAATTGAGCCTAAAAACCCTCCTCAGGATACTGTAAAAAACATCAGGCCAAACATTATTGCACTTCCAACCGATT
CTGTTTTTACAGATAAAGGTTTAAAGTTAAAAGCCTACAAAAAGAACGCTCACGCCTCCTACTATGCTGATCGTTTTAAT
GGAAGAAAAACTGCCGACGGAAGTCGTTTTAACAACAACAAATATACTGCGGCACATAAAAAACTCCCTTTTGGAACCAG
AGTTAAAGTTACCAACGAAGCCAATGGGAAGTTTGTAATTGTAAAAATTACAGATCGAGGTCCGTTTGTAAAAACACGCG
AAATAGATCTTTCCAAACGAGCTTTTATGGAAATCACCAAACATAAAGGTGCTGGTGCCATGAAAGTAACAATTGAAACT
ATAATCGAATAA

Upstream 100 bases:

>100_bases
GTTCTAAAAAATACCAATTAAAAAGCCCTTGAAAATAGGGCTTTTTTTATCTCGGCATATTATTTGTACAAACTCCCCCA
AGTCTGAAAAAAAATAAATC

Downstream 100 bases:

>100_bases
AAAAATCCCGCTTAAAGCGGGATTTTTTATTTAAACCAATTTTTTCAAACTCATCGCAATTCCGGTATGAATTCCTTCAT
GGTAATTATTAAAATCTAAT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKKNIILSTLTITFLSCFTYVISQTKPVIEPKNPPQDTVKNIRPNIIALPTDSVFTDKGLKLKAYKKNAHASYYADRFN
GRKTADGSRFNNNKYTAAHKKLPFGTRVKVTNEANGKFVIVKITDRGPFVKTREIDLSKRAFMEITKHKGAGAMKVTIET
IIE

Sequences:

>Translated_163_residues
MSKKNIILSTLTITFLSCFTYVISQTKPVIEPKNPPQDTVKNIRPNIIALPTDSVFTDKGLKLKAYKKNAHASYYADRFN
GRKTADGSRFNNNKYTAAHKKLPFGTRVKVTNEANGKFVIVKITDRGPFVKTREIDLSKRAFMEITKHKGAGAMKVTIET
IIE
>Mature_162_residues
SKKNIILSTLTITFLSCFTYVISQTKPVIEPKNPPQDTVKNIRPNIIALPTDSVFTDKGLKLKAYKKNAHASYYADRFNG
RKTADGSRFNNNKYTAAHKKLPFGTRVKVTNEANGKFVIVKITDRGPFVKTREIDLSKRAFMEITKHKGAGAMKVTIETI
IE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 18324; Mature: 18192

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKNIILSTLTITFLSCFTYVISQTKPVIEPKNPPQDTVKNIRPNIIALPTDSVFTDKG
CCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEECCCCEECCCC
LKLKAYKKNAHASYYADRFNGRKTADGSRFNNNKYTAAHKKLPFGTRVKVTNEANGKFVI
CEEEEECCCCCCEEEHHHCCCCCCCCCCCCCCCCEEEHHCCCCCCCEEEEEECCCCEEEE
VKITDRGPFVKTREIDLSKRAFMEITKHKGAGAMKVTIETIIE
EEECCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SKKNIILSTLTITFLSCFTYVISQTKPVIEPKNPPQDTVKNIRPNIIALPTDSVFTDKG
CCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEECCCCEECCCC
LKLKAYKKNAHASYYADRFNGRKTADGSRFNNNKYTAAHKKLPFGTRVKVTNEANGKFVI
CEEEEECCCCCCEEEHHHCCCCCCCCCCCCCCCCEEEHHCCCCCCCEEEEEECCCCEEEE
VKITDRGPFVKTREIDLSKRAFMEITKHKGAGAMKVTIETIIE
EEECCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]