| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is nahA [H]
Identifier: 146298437
GI number: 146298437
Start: 737391
End: 739691
Strand: Direct
Name: nahA [H]
Synonym: Fjoh_0674
Alternate gene names: 146298437
Gene position: 737391-739691 (Clockwise)
Preceding gene: 146298435
Following gene: 146298441
Centisome position: 12.09
GC content: 35.46
Gene sequence:
>2301_bases ATGCAAAAAAGTATATTTCTTCTTTTGATTTTCTGTTTCTCTTTCGGAAATGCGCAAAGTACTTGTGATAACACTTTGAT AATTCCCGCTCCCAATTTTTATAAAACAAACGGAGACAGTATTCGTATAAACGGAAAAATCAAAATTGCATTCGACAAAA ATACATACAGCGCAAAAGAATTAAAAACTGCACAAATTTTTGAGTCGGCAGTAAATGCTAATACACCAAATAAAAAAAGC AATATTGAAGTTTTGTTTATTGCCGAAAAACCATCGCCAGCTTCAAAAAAAGAAGGCTATAAAATCAATATTTCTTCCAA AAAAATAACCGTTACCGGAAGTGAAGAAGGATTATTTTATGCAGTTCAGAGTTTATTGCAGCTTTTGCCGAACCAGCCCA AAAATCAGGAAATAAAATTACCCTTTGCAACTATCGAAGACGAGCCCAGATACGACTACCGCGGGCTTCACCTCGATGTG TGCCGTCATTTTTTCTCGGTTAATGTTATAAAAGATTTTATCGCACAAATGTCTTATTATAAATTAAATAATTTCCATTG GCATTTAACCGATGATCAGGGCTGGAGAATTGAAATAAAAAAATACCCAAAACTTACCGAAGTCGGATCTAAAAGAGCAC AGACTTTAGTAGGCAATAAATTTGAACGATTCCCGTATTTTTTTGACGGAAATCCATATGGCGGATTTTATACTCAGGAA GAAATTAAAGACGTTGTAAAATTTGCCGAAGACCATTATGTAAATATTATTCCCGAAATCGAAATGCCGGGTCATGCCAC TGCAGCGGTAACGGCTTATCCAAATCTATCTTGTTTTCCGGATCGAAATTATAAAGTTGTAGAATCATGGGGCGTTTTTG AAGATATTTTTTGTGCCGGAAAAGAAGAAACTTTTACTTTTTTAGAAGATGTTTTAACAGAAGTTATGGCTTTATTTCCG AGTAAATACATTCATATTGGCGGAGATGAATGCCCAAAAGCAAGATGGAAAGAATGTCCGAACTGTCAAAAGAGAATTGC AGCTTTAGGTTTAAAAGACGAACATGAACTGCAAAGCTATTTAACAACACGAATTGAAAAATTCCTAAACGCAAATGGAA GGCAAATCCTGGGCTGGGACGAAATGCTGGAAGGCGGACTTGCGCCAAATGCAGCTGTAATGTCATGGCGAGGCGAATCT GGCGGCATCAGCGCTGCAAAACAAAAGCATTTTGTGATTATGAATCCTGAGCAAGTGCTGTATCTGGATTACAACCAAGG TTATTCTCCTCAGGAACCTTTAACAATTGGAAGATTAACAACGGTTGAAAAAATATACAATTACAATCCAACTCCTGTAG ACAGCTTAACGGTTGAGGAGCAAAAATACATTATGGGCGTACAGTCTAATCTTTGGTCTGAATATTTGACAACTCCTGCG AAATTAAATTATATGATTTATCCAAGAGTTTTTGCTTTAGCAGAAATTGCGTGGACTGAACCCAAAAACAAGAATTACAA CCGTTTTATTCTAAATCAAATTCCGCATCATTTAGAGAAACTCGAAGCACAAAAAAGAATGTATAAAGTTCCAATTCCTT TTGGATCTGAAGAAACCGCTTTAATTGCATCAAGTTATATTTTAGACTTAAAACCCACAATTAAAAACGGGCAGATATTC TACACAATTGACGGTTACAATCCAGATGAAACGGCAGAACTTTATACAAAACCTGTAACGATACATATTCCAAAAGGAGA ATTCCGAATTATAAAAACAGTCCAAATCAGTCCGGGCGGCAGAAAAAGTTCGATCAGTAAAATACTAGTTCGAAATCCAG ATTTGAAACCGACCTTAGCACTAAAACCAACAAAAAAGGGTTTAAAATTCGATTATTATACCGGAACTTTTCAGCAGGTT CAGGATTTAGAATTGACAAAACCTGTTAATTCGGGCATTTTTGAAGGCAAAATAAGTGCTGAAAAATGGAAAACGAAATT AGAACGTTATATCGGCTTAAAATTTGACGGCTATATCTTTATTCCAGAAACAGCAAATTATACAATTTCAACGCTTTCAG ATGACGGATCGAAGCTTTTTATAGACAATGAACTAGTTGTAAACAACGACGGCATACATTGGCTTAATGAAGCTTACGGA GTTATTAAACTCGAAAAAGGATTTCATAAAATCAACATCAGCTATTTTGATCAGGTTGGAGGTACTACTTTAACTTGTTT TATACAACAGGAAGGAAAAGAAAAACAGGAAATCAGTGAATCGCAGTTGTATTATGAATAA
Upstream 100 bases:
>100_bases TACACTATTTTAAAGACATTTACACACAAATACCTTTTGCAAAAAAAATGCAAACTAACTAACAAACCTTAAATTTGTTT AACAAAACAAAAAAGTAACC
Downstream 100 bases:
>100_bases GAAAAAAGATTGCATGAGAAGAACAACTCTTTCCATTCGACGTAATAACCTATAGATATTGTATCCCCAAAACCCCAGCG GGGTAAAATATGTATAGATT
Product: beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-GlcNAcase; Beta-N-acetylhexosaminidase; Beta-NAHase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 766; Mature: 766
Protein sequence:
>766_residues MQKSIFLLLIFCFSFGNAQSTCDNTLIIPAPNFYKTNGDSIRINGKIKIAFDKNTYSAKELKTAQIFESAVNANTPNKKS NIEVLFIAEKPSPASKKEGYKINISSKKITVTGSEEGLFYAVQSLLQLLPNQPKNQEIKLPFATIEDEPRYDYRGLHLDV CRHFFSVNVIKDFIAQMSYYKLNNFHWHLTDDQGWRIEIKKYPKLTEVGSKRAQTLVGNKFERFPYFFDGNPYGGFYTQE EIKDVVKFAEDHYVNIIPEIEMPGHATAAVTAYPNLSCFPDRNYKVVESWGVFEDIFCAGKEETFTFLEDVLTEVMALFP SKYIHIGGDECPKARWKECPNCQKRIAALGLKDEHELQSYLTTRIEKFLNANGRQILGWDEMLEGGLAPNAAVMSWRGES GGISAAKQKHFVIMNPEQVLYLDYNQGYSPQEPLTIGRLTTVEKIYNYNPTPVDSLTVEEQKYIMGVQSNLWSEYLTTPA KLNYMIYPRVFALAEIAWTEPKNKNYNRFILNQIPHHLEKLEAQKRMYKVPIPFGSEETALIASSYILDLKPTIKNGQIF YTIDGYNPDETAELYTKPVTIHIPKGEFRIIKTVQISPGGRKSSISKILVRNPDLKPTLALKPTKKGLKFDYYTGTFQQV QDLELTKPVNSGIFEGKISAEKWKTKLERYIGLKFDGYIFIPETANYTISTLSDDGSKLFIDNELVVNNDGIHWLNEAYG VIKLEKGFHKINISYFDQVGGTTLTCFIQQEGKEKQEISESQLYYE
Sequences:
>Translated_766_residues MQKSIFLLLIFCFSFGNAQSTCDNTLIIPAPNFYKTNGDSIRINGKIKIAFDKNTYSAKELKTAQIFESAVNANTPNKKS NIEVLFIAEKPSPASKKEGYKINISSKKITVTGSEEGLFYAVQSLLQLLPNQPKNQEIKLPFATIEDEPRYDYRGLHLDV CRHFFSVNVIKDFIAQMSYYKLNNFHWHLTDDQGWRIEIKKYPKLTEVGSKRAQTLVGNKFERFPYFFDGNPYGGFYTQE EIKDVVKFAEDHYVNIIPEIEMPGHATAAVTAYPNLSCFPDRNYKVVESWGVFEDIFCAGKEETFTFLEDVLTEVMALFP SKYIHIGGDECPKARWKECPNCQKRIAALGLKDEHELQSYLTTRIEKFLNANGRQILGWDEMLEGGLAPNAAVMSWRGES GGISAAKQKHFVIMNPEQVLYLDYNQGYSPQEPLTIGRLTTVEKIYNYNPTPVDSLTVEEQKYIMGVQSNLWSEYLTTPA KLNYMIYPRVFALAEIAWTEPKNKNYNRFILNQIPHHLEKLEAQKRMYKVPIPFGSEETALIASSYILDLKPTIKNGQIF YTIDGYNPDETAELYTKPVTIHIPKGEFRIIKTVQISPGGRKSSISKILVRNPDLKPTLALKPTKKGLKFDYYTGTFQQV QDLELTKPVNSGIFEGKISAEKWKTKLERYIGLKFDGYIFIPETANYTISTLSDDGSKLFIDNELVVNNDGIHWLNEAYG VIKLEKGFHKINISYFDQVGGTTLTCFIQQEGKEKQEISESQLYYE >Mature_766_residues MQKSIFLLLIFCFSFGNAQSTCDNTLIIPAPNFYKTNGDSIRINGKIKIAFDKNTYSAKELKTAQIFESAVNANTPNKKS NIEVLFIAEKPSPASKKEGYKINISSKKITVTGSEEGLFYAVQSLLQLLPNQPKNQEIKLPFATIEDEPRYDYRGLHLDV CRHFFSVNVIKDFIAQMSYYKLNNFHWHLTDDQGWRIEIKKYPKLTEVGSKRAQTLVGNKFERFPYFFDGNPYGGFYTQE EIKDVVKFAEDHYVNIIPEIEMPGHATAAVTAYPNLSCFPDRNYKVVESWGVFEDIFCAGKEETFTFLEDVLTEVMALFP SKYIHIGGDECPKARWKECPNCQKRIAALGLKDEHELQSYLTTRIEKFLNANGRQILGWDEMLEGGLAPNAAVMSWRGES GGISAAKQKHFVIMNPEQVLYLDYNQGYSPQEPLTIGRLTTVEKIYNYNPTPVDSLTVEEQKYIMGVQSNLWSEYLTTPA KLNYMIYPRVFALAEIAWTEPKNKNYNRFILNQIPHHLEKLEAQKRMYKVPIPFGSEETALIASSYILDLKPTIKNGQIF YTIDGYNPDETAELYTKPVTIHIPKGEFRIIKTVQISPGGRKSSISKILVRNPDLKPTLALKPTKKGLKFDYYTGTFQQV QDLELTKPVNSGIFEGKISAEKWKTKLERYIGLKFDGYIFIPETANYTISTLSDDGSKLFIDNELVVNNDGIHWLNEAYG VIKLEKGFHKINISYFDQVGGTTLTCFIQQEGKEKQEISESQLYYE
Specific function: Unknown
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI189181666, Length=363, Percent_Identity=26.4462809917355, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI4504373, Length=366, Percent_Identity=23.4972677595628, Blast_Score=115, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17569815, Length=422, Percent_Identity=26.0663507109005, Blast_Score=133, Evalue=3e-31, Organism=Drosophila melanogaster, GI281365639, Length=470, Percent_Identity=23.4042553191489, Blast_Score=119, Evalue=7e-27, Organism=Drosophila melanogaster, GI24657474, Length=470, Percent_Identity=23.4042553191489, Blast_Score=119, Evalue=7e-27, Organism=Drosophila melanogaster, GI24657468, Length=470, Percent_Identity=23.4042553191489, Blast_Score=119, Evalue=7e-27, Organism=Drosophila melanogaster, GI17647501, Length=470, Percent_Identity=23.4042553191489, Blast_Score=119, Evalue=7e-27, Organism=Drosophila melanogaster, GI24653074, Length=430, Percent_Identity=24.6511627906977, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI45551090, Length=430, Percent_Identity=24.6511627906977, Blast_Score=110, Evalue=4e-24, Organism=Drosophila melanogaster, GI17933586, Length=460, Percent_Identity=23.0434782608696, Blast_Score=86, Evalue=9e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR001540 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR011658 [H]
Pfam domain/function: PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 87557; Mature: 87557
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKSIFLLLIFCFSFGNAQSTCDNTLIIPAPNFYKTNGDSIRINGKIKIAFDKNTYSAKE CCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEECCCCEEEEEEEEEEEECCCCCCHHH LKTAQIFESAVNANTPNKKSNIEVLFIAEKPSPASKKEGYKINISSKKITVTGSEEGLFY HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEEEECCCCCHHH AVQSLLQLLPNQPKNQEIKLPFATIEDEPRYDYRGLHLDVCRHFFSVNVIKDFIAQMSYY HHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHE KLNNFHWHLTDDQGWRIEIKKYPKLTEVGSKRAQTLVGNKFERFPYFFDGNPYGGFYTQE EECCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHCCEEECCCCCCCCCCHH EIKDVVKFAEDHYVNIIPEIEMPGHATAAVTAYPNLSCFPDRNYKVVESWGVFEDIFCAG HHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCCEEEEECCCCHHHHHHCC KEETFTFLEDVLTEVMALFPSKYIHIGGDECPKARWKECPNCQKRIAALGLKDEHELQSY CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHCCCCHHHHHHHCCCCCHHHHHHH LTTRIEKFLNANGRQILGWDEMLEGGLAPNAAVMSWRGESGGISAAKQKHFVIMNPEQVL HHHHHHHHHCCCCCEEECHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEE YLDYNQGYSPQEPLTIGRLTTVEKIYNYNPTPVDSLTVEEQKYIMGVQSNLWSEYLTTPA EEECCCCCCCCCCEEECHHHHHHHHHCCCCCCCCCEEECCHHHEEEHHHHHHHHHCCCCH KLNYMIYPRVFALAEIAWTEPKNKNYNRFILNQIPHHLEKLEAQKRMYKVPIPFGSEETA HEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCE LIASSYILDLKPTIKNGQIFYTIDGYNPDETAELYTKPVTIHIPKGEFRIIKTVQISPGG EEEEEEEEEECCCCCCCEEEEEECCCCCCCCHHHEECCEEEEECCCCEEEEEEEEECCCC RKSSISKILVRNPDLKPTLALKPTKKGLKFDYYTGTFQQVQDLELTKPVNSGIFEGKISA CHHHHHHHEEECCCCCCEEEECCCCCCCEEEEECCCHHHHHCCEECCCCCCCCCCCCCCH EKWKTKLERYIGLKFDGYIFIPETANYTISTLSDDGSKLFIDNELVVNNDGIHWLNEAYG HHHHHHHHHHHCCEECCEEEEECCCCEEEEEECCCCCEEEEECEEEEECCCCEECCCCCC VIKLEKGFHKINISYFDQVGGTTLTCFIQQEGKEKQEISESQLYYE EEEEECCCEEEEEEEHHCCCCCEEEEEEECCCCCHHHHHHHHCCCC >Mature Secondary Structure MQKSIFLLLIFCFSFGNAQSTCDNTLIIPAPNFYKTNGDSIRINGKIKIAFDKNTYSAKE CCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEECCCCEEEEEEEEEEEECCCCCCHHH LKTAQIFESAVNANTPNKKSNIEVLFIAEKPSPASKKEGYKINISSKKITVTGSEEGLFY HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEEEECCCCCHHH AVQSLLQLLPNQPKNQEIKLPFATIEDEPRYDYRGLHLDVCRHFFSVNVIKDFIAQMSYY HHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHE KLNNFHWHLTDDQGWRIEIKKYPKLTEVGSKRAQTLVGNKFERFPYFFDGNPYGGFYTQE EECCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHCCEEECCCCCCCCCCHH EIKDVVKFAEDHYVNIIPEIEMPGHATAAVTAYPNLSCFPDRNYKVVESWGVFEDIFCAG HHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCCEEEEECCCCHHHHHHCC KEETFTFLEDVLTEVMALFPSKYIHIGGDECPKARWKECPNCQKRIAALGLKDEHELQSY CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHCCCCHHHHHHHCCCCCHHHHHHH LTTRIEKFLNANGRQILGWDEMLEGGLAPNAAVMSWRGESGGISAAKQKHFVIMNPEQVL HHHHHHHHHCCCCCEEECHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEE YLDYNQGYSPQEPLTIGRLTTVEKIYNYNPTPVDSLTVEEQKYIMGVQSNLWSEYLTTPA EEECCCCCCCCCCEEECHHHHHHHHHCCCCCCCCCEEECCHHHEEEHHHHHHHHHCCCCH KLNYMIYPRVFALAEIAWTEPKNKNYNRFILNQIPHHLEKLEAQKRMYKVPIPFGSEETA HEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCE LIASSYILDLKPTIKNGQIFYTIDGYNPDETAELYTKPVTIHIPKGEFRIIKTVQISPGG EEEEEEEEEECCCCCCCEEEEEECCCCCCCCHHHEECCEEEEECCCCEEEEEEEEECCCC RKSSISKILVRNPDLKPTLALKPTKKGLKFDYYTGTFQQVQDLELTKPVNSGIFEGKISA CHHHHHHHEEECCCCCCEEEECCCCCCCEEEEECCCHHHHHCCEECCCCCCCCCCCCCCH EKWKTKLERYIGLKFDGYIFIPETANYTISTLSDDGSKLFIDNELVVNNDGIHWLNEAYG HHHHHHHHHHHCCEECCEEEEECCCCEEEEEECCCCCEEEEECEEEEECCCCEECCCCCC VIKLEKGFHKINISYFDQVGGTTLTCFIQQEGKEKQEISESQLYYE EEEEECCCEEEEEEEHHCCCCCEEEEEEECCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7881557; 12949112 [H]