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The map label for this gene is bphB [H]

Identifier: 146284493

GI number: 146284493

Start: 4534974

End: 4537244

Strand: Direct

Name: bphB [H]

Synonym: PST_4182

Alternate gene names: 146284493

Gene position: 4534974-4537244 (Clockwise)

Preceding gene: 146284490

Following gene: 146284494

Centisome position: 99.29

GC content: 65.87

Gene sequence:

>2271_bases
ATGAGCACTACCGAAGCCCAGGACCTGCTCGAGGCGATCGACCGATGTGCCGATGAGCCCATCCATATTCCGGGCAGCAT
CCAGCCGCACGGCTTCCTGCTGGTGGTCAGCGAGCCCGACTTGCGCATTCAGCAGGCCAGCGAGAACGTGCGCGACTGGC
TGGACGTCGAGGCGCGTCAGCTGCTCGGGCAACCGCTGTCGGCCCTGCTGCCGATCGAGCGTATCCAGGCCGGCCTGCCG
GCGCTGCAGGATGGCGATCACAACCCGTTCCACCTGAGCGACGTACAGCTCACCCTGCCAGGCGCGGGCGACCTGCTCCT
GGCGCTGATGGCGCACCGGCACCAGGGCCAGCTGATCCTCGAGTTCGAGCGCGCCGGCAACTCTGGCCAGGCCTACCAGG
CGCTGTATCCGTTGATGCGCACCTTCGTGTCCCGCCTGCAGGAAGCCCGCGAACTCGAAGCGCTGTGTCAGCATGCGGTC
GAAGAGGTCAAGCGCATCACCGGCTTCGGGCGCGTCAAGGCGTACCGTTTCGATGCCGAAGACAACGGCCTGGTCCTGGC
CGAAGTCGCCGATCCCGGCTACCCGTCCTATCTGGGCCTGTGCTTCCCGGCGGCGGACATTCCGCAGCAGGCCCGGCGCC
TGTACCGCGACAACCTGATTCGCGTGATCCAGGACGCCAACTACAAGCCGTCGCCCCTGGTGCCGACCCTGAACCCGATT
TCCGGCACGCCACTGGACCTGAGTTTTTCCGCCTTGCGCAGCGTCTCTCCGGTGCACCTGCAGTACATGCGCAACATGGG
CACGCTGGCGTCGATGTCCATTTCCATCGTCATCCGCGACCGCCTGTGGGGGTTGATCTCCTGCCACGATGCCCAGCCAC
GGCAGGTCAGCTACCAGACCCGTACCGCCTGCGAGCTGCTCGGCCGCATCCTTGCCCTGCAGATCGAGGCCAGGGAAACC
GAGACCCTGGCGCAGCGCAAGCTGCAACTGCGTCAGCAGATCGTCCACCTGCTGTCGGCCATGGCCGACCGCGACAGCGT
GGTGGAGGGCTTTCGCCAGGCGCCCGAGGTGGTGCTCGGCTTCGCCAAGGCCGAAGGCGCGGCCGTGATTTCCGCTGACA
ACTGCGAGACCGTTGGCGATGCGCCGGACAGCGAACTGATCATGCAGCTCGCCCACTGGCTGGGCCAACGGCATGACCAG
CTGGTCTTCCAGAGCGACTGCGTCAGCCGCGACATTCCGCACCTGCCCGCGCTGGCCGAGCATTGTGCCGGCGTCATGGC
CATCTCCATTTCCCGGCTGCACGCCCATTATCTGATCTGGTTCCGCCGCGAGCAGGTCAAGACCGTGAACTGGGCCGGCC
AGCCGGAGAAGCAGATCGATCGCATCAGCGGTGCGCTCAGCCCCCGCCACAGTTTCGAACGCTGGCAGGAGACGCTGCGC
GGTTACTCGCATGCCTGGGATCAGGTCGAAATCGAAGGCGCGCTGGAGTTGCGCAACGCGGTGCTCGGCATCGTGCTGCG
CAAGGCCGAGGAAATGGCCCAGCTGGCCGGCGAGCTGCGCGCCAGCAACAAGGAACTGGAGGCCTTCTCCTACAGCGTGT
CCCACGACCTGCGGGCGCCACTGCGGCATATCGCCGGCTATACCGAACTGCTCGGAGAAATGGAAAGCAGCCAGCTCAGC
GAGCGCGGCATGCGCTTTCTCGACAATATCGCGGACGCCGCACGTTTCGCCGGCACACTGGTCGACAACCTGCTGAGCTT
CTCGCAGATGGGCCGCGCCGCCCTGCGCCTGTCGGACGTCGACCTCGGTGCGCTGGTCGCCTCGATTCGCGAGGAGCTGG
CGCCGGACTGCGAGGGGCGACAGATCGAATGGCACCTGCTGCCGATGCCGATCGTCGTCGCCGATGCCGCCTTCATTCAC
ATGGTCCTACGCAACCTCATCGACAACGCGGTGAAGTACAGCCGCACCCGCGACGTCGCGGTCATCGAGGTCGGCGCAGA
ACAGCGCTCGGGCGAGGTCGTGGTCTACGTGCGGGACAACGGTGTCGGCTTCGACATGCAGTATGCCGGCAAGCTGTTCG
GCGTATTCCAGCGCCTGCATCGCATGGAAGAGTTCGAGGGCACCGGCATCGGCCTGGCCAGCGTGCGGCGCATCGTCGAG
CGCCACGATGGCCGCGTGTGGGCCGAGGGCCAGCTGGACAAGGGCGCCACCTTCTATTTCGCACTGCCTAAACTGACTTA
CACATCGTCCCTCCTGGACCGAGACATCTGA

Upstream 100 bases:

>100_bases
AGCGCGATCAACCGCATAGTCGCCGACATTAGGTAGCAACTTGCATTGGTGCCTGCCCGTCACCTCCGGTCCGGACGAGA
CCAGAACAAGGACACACACA

Downstream 100 bases:

>100_bases
TGCTGAAACCGATACTGCTGGTGGAGGACAACCCCCACGACCTGGAACTGACGCTGATCGCCCTGGAGCGCAGCCAGCTG
GCCAACGACGTGGTGGTGAT

Product: phytochrome family protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 756; Mature: 755

Protein sequence:

>756_residues
MSTTEAQDLLEAIDRCADEPIHIPGSIQPHGFLLVVSEPDLRIQQASENVRDWLDVEARQLLGQPLSALLPIERIQAGLP
ALQDGDHNPFHLSDVQLTLPGAGDLLLALMAHRHQGQLILEFERAGNSGQAYQALYPLMRTFVSRLQEARELEALCQHAV
EEVKRITGFGRVKAYRFDAEDNGLVLAEVADPGYPSYLGLCFPAADIPQQARRLYRDNLIRVIQDANYKPSPLVPTLNPI
SGTPLDLSFSALRSVSPVHLQYMRNMGTLASMSISIVIRDRLWGLISCHDAQPRQVSYQTRTACELLGRILALQIEARET
ETLAQRKLQLRQQIVHLLSAMADRDSVVEGFRQAPEVVLGFAKAEGAAVISADNCETVGDAPDSELIMQLAHWLGQRHDQ
LVFQSDCVSRDIPHLPALAEHCAGVMAISISRLHAHYLIWFRREQVKTVNWAGQPEKQIDRISGALSPRHSFERWQETLR
GYSHAWDQVEIEGALELRNAVLGIVLRKAEEMAQLAGELRASNKELEAFSYSVSHDLRAPLRHIAGYTELLGEMESSQLS
ERGMRFLDNIADAARFAGTLVDNLLSFSQMGRAALRLSDVDLGALVASIREELAPDCEGRQIEWHLLPMPIVVADAAFIH
MVLRNLIDNAVKYSRTRDVAVIEVGAEQRSGEVVVYVRDNGVGFDMQYAGKLFGVFQRLHRMEEFEGTGIGLASVRRIVE
RHDGRVWAEGQLDKGATFYFALPKLTYTSSLLDRDI

Sequences:

>Translated_756_residues
MSTTEAQDLLEAIDRCADEPIHIPGSIQPHGFLLVVSEPDLRIQQASENVRDWLDVEARQLLGQPLSALLPIERIQAGLP
ALQDGDHNPFHLSDVQLTLPGAGDLLLALMAHRHQGQLILEFERAGNSGQAYQALYPLMRTFVSRLQEARELEALCQHAV
EEVKRITGFGRVKAYRFDAEDNGLVLAEVADPGYPSYLGLCFPAADIPQQARRLYRDNLIRVIQDANYKPSPLVPTLNPI
SGTPLDLSFSALRSVSPVHLQYMRNMGTLASMSISIVIRDRLWGLISCHDAQPRQVSYQTRTACELLGRILALQIEARET
ETLAQRKLQLRQQIVHLLSAMADRDSVVEGFRQAPEVVLGFAKAEGAAVISADNCETVGDAPDSELIMQLAHWLGQRHDQ
LVFQSDCVSRDIPHLPALAEHCAGVMAISISRLHAHYLIWFRREQVKTVNWAGQPEKQIDRISGALSPRHSFERWQETLR
GYSHAWDQVEIEGALELRNAVLGIVLRKAEEMAQLAGELRASNKELEAFSYSVSHDLRAPLRHIAGYTELLGEMESSQLS
ERGMRFLDNIADAARFAGTLVDNLLSFSQMGRAALRLSDVDLGALVASIREELAPDCEGRQIEWHLLPMPIVVADAAFIH
MVLRNLIDNAVKYSRTRDVAVIEVGAEQRSGEVVVYVRDNGVGFDMQYAGKLFGVFQRLHRMEEFEGTGIGLASVRRIVE
RHDGRVWAEGQLDKGATFYFALPKLTYTSSLLDRDI
>Mature_755_residues
STTEAQDLLEAIDRCADEPIHIPGSIQPHGFLLVVSEPDLRIQQASENVRDWLDVEARQLLGQPLSALLPIERIQAGLPA
LQDGDHNPFHLSDVQLTLPGAGDLLLALMAHRHQGQLILEFERAGNSGQAYQALYPLMRTFVSRLQEARELEALCQHAVE
EVKRITGFGRVKAYRFDAEDNGLVLAEVADPGYPSYLGLCFPAADIPQQARRLYRDNLIRVIQDANYKPSPLVPTLNPIS
GTPLDLSFSALRSVSPVHLQYMRNMGTLASMSISIVIRDRLWGLISCHDAQPRQVSYQTRTACELLGRILALQIEARETE
TLAQRKLQLRQQIVHLLSAMADRDSVVEGFRQAPEVVLGFAKAEGAAVISADNCETVGDAPDSELIMQLAHWLGQRHDQL
VFQSDCVSRDIPHLPALAEHCAGVMAISISRLHAHYLIWFRREQVKTVNWAGQPEKQIDRISGALSPRHSFERWQETLRG
YSHAWDQVEIEGALELRNAVLGIVLRKAEEMAQLAGELRASNKELEAFSYSVSHDLRAPLRHIAGYTELLGEMESSQLSE
RGMRFLDNIADAARFAGTLVDNLLSFSQMGRAALRLSDVDLGALVASIREELAPDCEGRQIEWHLLPMPIVVADAAFIHM
VLRNLIDNAVKYSRTRDVAVIEVGAEQRSGEVVVYVRDNGVGFDMQYAGKLFGVFQRLHRMEEFEGTGIGLASVRRIVER
HDGRVWAEGQLDKGATFYFALPKLTYTSSLLDRDI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=255, Percent_Identity=25.8823529411765, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786912, Length=254, Percent_Identity=29.5275590551181, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1790861, Length=224, Percent_Identity=29.0178571428571, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789149, Length=257, Percent_Identity=24.124513618677, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI145693157, Length=242, Percent_Identity=24.7933884297521, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788393, Length=247, Percent_Identity=29.9595141700405, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1790436, Length=223, Percent_Identity=29.5964125560538, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786600, Length=247, Percent_Identity=26.7206477732794, Blast_Score=63, Evalue=9e-11,
Organism=Escherichia coli, GI1790551, Length=227, Percent_Identity=28.1938325991189, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 84345; Mature: 84214

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTEAQDLLEAIDRCADEPIHIPGSIQPHGFLLVVSEPDLRIQQASENVRDWLDVEARQ
CCCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
LLGQPLSALLPIERIQAGLPALQDGDHNPFHLSDVQLTLPGAGDLLLALMAHRHQGQLIL
HHCCCHHHHCCHHHHHCCCCCCCCCCCCCEEECEEEEECCCCHHHHHHHHHHCCCCCEEE
EFERAGNSGQAYQALYPLMRTFVSRLQEARELEALCQHAVEEVKRITGFGRVKAYRFDAE
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
DNGLVLAEVADPGYPSYLGLCFPAADIPQQARRLYRDNLIRVIQDANYKPSPLVPTLNPI
CCCEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SGTPLDLSFSALRSVSPVHLQYMRNMGTLASMSISIVIRDRLWGLISCHDAQPRQVSYQT
CCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHEEEEEEEHHHCCEEECCCCCCCCCCHHH
RTACELLGRILALQIEARETETLAQRKLQLRQQIVHLLSAMADRDSVVEGFRQAPEVVLG
HHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHEE
FAKAEGAAVISADNCETVGDAPDSELIMQLAHWLGQRHDQLVFQSDCVSRDIPHLPALAE
HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH
HCAGVMAISISRLHAHYLIWFRREQVKTVNWAGQPEKQIDRISGALSPRHSFERWQETLR
HHHHHHHHHHHHHHHHHHEEEEHHHHCEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
GYSHAWDQVEIEGALELRNAVLGIVLRKAEEMAQLAGELRASNKELEAFSYSVSHDLRAP
HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRHIAGYTELLGEMESSQLSERGMRFLDNIADAARFAGTLVDNLLSFSQMGRAALRLSDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCC
DLGALVASIREELAPDCEGRQIEWHLLPMPIVVADAAFIHMVLRNLIDNAVKYSRTRDVA
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VIEVGAEQRSGEVVVYVRDNGVGFDMQYAGKLFGVFQRLHRMEEFEGTGIGLASVRRIVE
EEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RHDGRVWAEGQLDKGATFYFALPKLTYTSSLLDRDI
HCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure 
STTEAQDLLEAIDRCADEPIHIPGSIQPHGFLLVVSEPDLRIQQASENVRDWLDVEARQ
CCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
LLGQPLSALLPIERIQAGLPALQDGDHNPFHLSDVQLTLPGAGDLLLALMAHRHQGQLIL
HHCCCHHHHCCHHHHHCCCCCCCCCCCCCEEECEEEEECCCCHHHHHHHHHHCCCCCEEE
EFERAGNSGQAYQALYPLMRTFVSRLQEARELEALCQHAVEEVKRITGFGRVKAYRFDAE
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
DNGLVLAEVADPGYPSYLGLCFPAADIPQQARRLYRDNLIRVIQDANYKPSPLVPTLNPI
CCCEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SGTPLDLSFSALRSVSPVHLQYMRNMGTLASMSISIVIRDRLWGLISCHDAQPRQVSYQT
CCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHEEEEEEEHHHCCEEECCCCCCCCCCHHH
RTACELLGRILALQIEARETETLAQRKLQLRQQIVHLLSAMADRDSVVEGFRQAPEVVLG
HHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHEE
FAKAEGAAVISADNCETVGDAPDSELIMQLAHWLGQRHDQLVFQSDCVSRDIPHLPALAE
HHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHH
HCAGVMAISISRLHAHYLIWFRREQVKTVNWAGQPEKQIDRISGALSPRHSFERWQETLR
HHHHHHHHHHHHHHHHHHEEEEHHHHCEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
GYSHAWDQVEIEGALELRNAVLGIVLRKAEEMAQLAGELRASNKELEAFSYSVSHDLRAP
HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRHIAGYTELLGEMESSQLSERGMRFLDNIADAARFAGTLVDNLLSFSQMGRAALRLSDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCC
DLGALVASIREELAPDCEGRQIEWHLLPMPIVVADAAFIHMVLRNLIDNAVKYSRTRDVA
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
VIEVGAEQRSGEVVVYVRDNGVGFDMQYAGKLFGVFQRLHRMEEFEGTGIGLASVRRIVE
EEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RHDGRVWAEGQLDKGATFYFALPKLTYTSSLLDRDI
HCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]