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The map label for this gene is scoP [H]

Identifier: 146284483

GI number: 146284483

Start: 4525754

End: 4526389

Strand: Direct

Name: scoP [H]

Synonym: PST_4172

Alternate gene names: 146284483

Gene position: 4525754-4526389 (Clockwise)

Preceding gene: 146284482

Following gene: 146284488

Centisome position: 99.09

GC content: 65.25

Gene sequence:

>636_bases
ATGACCCGCATCCAGAAAACCGTCTTCATCCTCGTTGCGCTGATCGCGCTGGTCGTCGGGCTGACGGTTTCCAAGGTGCT
CAACAGCCAGCGCCAGCTCGACCCCACCCAGCTGCTGGATGCCGGCATCGTCCTGCTGCCGCAGAGCCGCCCGGTGCCGG
CGCTGAGCCTGACGGATCAGGACGGCGAAGCGGTGCAGCTGGATGCATTGAAGGGGCAATGGACGCTGCTGTTCTTCGGC
TACACCTTCTGCCCGGACATCTGCCCCACCACCCTGGCCGAGCTGCGCCAGCTCAACGGCATGCTGCCGGAGACGGTGCG
CGGCCAGTTGCGCACCATACTGGTCAGTGTCGATCCGGACCGCGACACGCCCGCGCAGCTCAAGGAATACCTCGGCTATT
TCAACGCCGGCTTCCAGGGCCTGACCGGCCCGCTGGACGATATCCAGACCCTGGCCAACGGCGTCGGCATTCCCTTCATT
CCGGGGGATACCAGCAAGGAGAACTACACCGTCGACCACAGCGGCAACCTGGTCCTGATCGGCCCGGACGGCCGCCAGCG
CGGCTTTATCCGTTCGCCATTGCGGGTGCAGAAACTGGCCGAGCAGTTGCCTGAGCTGGTCAACCGGGCGGAGTGA

Upstream 100 bases:

>100_bases
AGCTATGGCAAGGAGCAGCAACGCAGTGTCGGGGCCATGGGCGCCGAAATTGACCAACTGAGCTCACCAAACAGGCCACC
CAGTCGCCCAAAGGACGTTC

Downstream 100 bases:

>100_bases
GAAACACGAGCCTGTTGGGCATCATGGCTCACCGACCGGATTTGCCGACGCTGCATTCCCCCTGCGTGGTTCACGCAGCG
ACGCGCTGATGCGTGCGCGT

Product: Sco1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTRIQKTVFILVALIALVVGLTVSKVLNSQRQLDPTQLLDAGIVLLPQSRPVPALSLTDQDGEAVQLDALKGQWTLLFFG
YTFCPDICPTTLAELRQLNGMLPETVRGQLRTILVSVDPDRDTPAQLKEYLGYFNAGFQGLTGPLDDIQTLANGVGIPFI
PGDTSKENYTVDHSGNLVLIGPDGRQRGFIRSPLRVQKLAEQLPELVNRAE

Sequences:

>Translated_211_residues
MTRIQKTVFILVALIALVVGLTVSKVLNSQRQLDPTQLLDAGIVLLPQSRPVPALSLTDQDGEAVQLDALKGQWTLLFFG
YTFCPDICPTTLAELRQLNGMLPETVRGQLRTILVSVDPDRDTPAQLKEYLGYFNAGFQGLTGPLDDIQTLANGVGIPFI
PGDTSKENYTVDHSGNLVLIGPDGRQRGFIRSPLRVQKLAEQLPELVNRAE
>Mature_210_residues
TRIQKTVFILVALIALVVGLTVSKVLNSQRQLDPTQLLDAGIVLLPQSRPVPALSLTDQDGEAVQLDALKGQWTLLFFGY
TFCPDICPTTLAELRQLNGMLPETVRGQLRTILVSVDPDRDTPAQLKEYLGYFNAGFQGLTGPLDDIQTLANGVGIPFIP
GDTSKENYTVDHSGNLVLIGPDGRQRGFIRSPLRVQKLAEQLPELVNRAE

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=132, Percent_Identity=35.6060606060606, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI281182727, Length=138, Percent_Identity=32.6086956521739, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI281182722, Length=138, Percent_Identity=32.6086956521739, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI281182716, Length=138, Percent_Identity=32.6086956521739, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI153791313, Length=138, Percent_Identity=32.6086956521739, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17531419, Length=150, Percent_Identity=27.3333333333333, Blast_Score=84, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6319498, Length=220, Percent_Identity=30.9090909090909, Blast_Score=96, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=172, Percent_Identity=31.3953488372093, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI19920710, Length=136, Percent_Identity=30.8823529411765, Blast_Score=84, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23092; Mature: 22961

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIQKTVFILVALIALVVGLTVSKVLNSQRQLDPTQLLDAGIVLLPQSRPVPALSLTDQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCCEEEEECC
DGEAVQLDALKGQWTLLFFGYTFCPDICPTTLAELRQLNGMLPETVRGQLRTILVSVDPD
CCCEEEEECCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCCHHHHHHEEEEEEEECCC
RDTPAQLKEYLGYFNAGFQGLTGPLDDIQTLANGVGIPFIPGDTSKENYTVDHSGNLVLI
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEE
GPDGRQRGFIRSPLRVQKLAEQLPELVNRAE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRIQKTVFILVALIALVVGLTVSKVLNSQRQLDPTQLLDAGIVLLPQSRPVPALSLTDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCCEEEEECC
DGEAVQLDALKGQWTLLFFGYTFCPDICPTTLAELRQLNGMLPETVRGQLRTILVSVDPD
CCCEEEEECCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCCHHHHHHEEEEEEEECCC
RDTPAQLKEYLGYFNAGFQGLTGPLDDIQTLANGVGIPFIPGDTSKENYTVDHSGNLVLI
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEE
GPDGRQRGFIRSPLRVQKLAEQLPELVNRAE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]