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The map label for this gene is psd

Identifier: 146284112

GI number: 146284112

Start: 4106882

End: 4107775

Strand: Direct

Name: psd

Synonym: PST_3800

Alternate gene names: 146284112

Gene position: 4106882-4107775 (Clockwise)

Preceding gene: 146284111

Following gene: 146284113

Centisome position: 89.92

GC content: 66.33

Gene sequence:

>894_bases
ATGAAAGACCGCCTGTTCGTCATCAGCCAGTATGTGCTGCCGCATCACCTGATTTCCCGCCTGGCCGGCTGCCTGGCCGA
ATGCCGCCTGCCCTGGGTGAAGAACACGTTCATCAAGTGGTTCGTCCGGCATTTTCAGGTCGACATGCGCGAGGCGCAGA
TCGAGGAGCCGACGGCCTACGAACATTTCAACGCCTTCTTCACCCGCGCCCTGAAGGACGGCGCCCGTCCGCTGGACAGC
ACGCCCGGCGCGATCCTCAACCCCTGCGACGGCGCCATCAGCCAGCTCGGCAAGATCGAGCAGGGCCGCATCTTCCAGGC
CAAGGGCCACAGTTTCAGCGCCATGGAGCTGCTCGGCGGCGATCATGAGCGTGCAGCACCGTTCATGGGCGGCGCCTTCG
CCACGGTGTACCTATCGCCCAAGGACTACCACCGCGTGCATATGCCGGTCAGCGGCACGCTGCGGGAGATGGTCTATGTG
CCGGGGCGGATCTTCTCGGTCAACACCGTCACGGCGCAGGGCGTGCCGGAGCTGTTCGCGCGCAACGAGCGGGTCGTCTG
CCTGTTCGACACCGAGCACGGCCCCATGGCGATGGTTCTGGTGGGCGCGATGATCGTTGCCAGCATCGAGACCGTCTGGG
CCGGGCTGGTGACCCCGCCCAAGCGCAGCCTGAAGACCTTCCGCTACGACGAAGCGGCTCGCGCGCCCATCCACCTGGAA
AAGGGCGCGGAGATGGGCCGTTTCAAACTGGGCTCCACCGTGATCCTGCTGTTCGGGCCGGACCGCGTGCGCTGGGCCGA
ACAGCTCGGCCCGCTGAGCCCGGTGTGCATGGGCGAGTCGCTGGGTCAGGCGGCGATCACCGCAGCCGCGAGCGAGGCCA
TCGAGCTTCAGTAA

Upstream 100 bases:

>100_bases
CCAAGGCGCTGGGCTATCCCCGCGTCAAGGGCTATGCCGGTTCCTGGGCCGAATGGGGCAACCTGCCTGACACCCCGGTG
CAGCAATGAAAAGGACACAC

Downstream 100 bases:

>100_bases
AAGGCGGGGCGCGACATTTCGGTAGCCCTCGGCTGCCGAATGTCGGGTAATATCATCGAGCCATCATTTAGTCCTGCCCC
TGCCGGCAGATATTGATAGA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKDRLFVISQYVLPHHLISRLAGCLAECRLPWVKNTFIKWFVRHFQVDMREAQIEEPTAYEHFNAFFTRALKDGARPLDS
TPGAILNPCDGAISQLGKIEQGRIFQAKGHSFSAMELLGGDHERAAPFMGGAFATVYLSPKDYHRVHMPVSGTLREMVYV
PGRIFSVNTVTAQGVPELFARNERVVCLFDTEHGPMAMVLVGAMIVASIETVWAGLVTPPKRSLKTFRYDEAARAPIHLE
KGAEMGRFKLGSTVILLFGPDRVRWAEQLGPLSPVCMGESLGQAAITAAASEAIELQ

Sequences:

>Translated_297_residues
MKDRLFVISQYVLPHHLISRLAGCLAECRLPWVKNTFIKWFVRHFQVDMREAQIEEPTAYEHFNAFFTRALKDGARPLDS
TPGAILNPCDGAISQLGKIEQGRIFQAKGHSFSAMELLGGDHERAAPFMGGAFATVYLSPKDYHRVHMPVSGTLREMVYV
PGRIFSVNTVTAQGVPELFARNERVVCLFDTEHGPMAMVLVGAMIVASIETVWAGLVTPPKRSLKTFRYDEAARAPIHLE
KGAEMGRFKLGSTVILLFGPDRVRWAEQLGPLSPVCMGESLGQAAITAAASEAIELQ
>Mature_297_residues
MKDRLFVISQYVLPHHLISRLAGCLAECRLPWVKNTFIKWFVRHFQVDMREAQIEEPTAYEHFNAFFTRALKDGARPLDS
TPGAILNPCDGAISQLGKIEQGRIFQAKGHSFSAMELLGGDHERAAPFMGGAFATVYLSPKDYHRVHMPVSGTLREMVYV
PGRIFSVNTVTAQGVPELFARNERVVCLFDTEHGPMAMVLVGAMIVASIETVWAGLVTPPKRSLKTFRYDEAARAPIHLE
KGAEMGRFKLGSTVILLFGPDRVRWAEQLGPLSPVCMGESLGQAAITAAASEAIELQ

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=297, Percent_Identity=31.3131313131313, Blast_Score=123, Evalue=2e-28,
Organism=Escherichia coli, GI1790604, Length=286, Percent_Identity=53.1468531468531, Blast_Score=307, Evalue=6e-85,
Organism=Caenorhabditis elegans, GI71980843, Length=276, Percent_Identity=30.0724637681159, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=276, Percent_Identity=30.0724637681159, Blast_Score=124, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6321609, Length=225, Percent_Identity=27.5555555555556, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6324160, Length=161, Percent_Identity=35.4037267080745, Blast_Score=83, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24649526, Length=307, Percent_Identity=31.9218241042345, Blast_Score=127, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24649528, Length=307, Percent_Identity=31.9218241042345, Blast_Score=127, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24649524, Length=307, Percent_Identity=31.9218241042345, Blast_Score=127, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_PSEU5 (A4VR22)

Other databases:

- EMBL:   CP000304
- RefSeq:   YP_001174265.1
- STRING:   A4VR22
- GeneID:   5096761
- GenomeReviews:   CP000304_GR
- KEGG:   psa:PST_3800
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   A4VR22
- ProtClustDB:   PRK00044
- BioCyc:   PSTU379731:PST_3800-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 32840; Mature: 32840

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDRLFVISQYVLPHHLISRLAGCLAECRLPWVKNTFIKWFVRHFQVDMREAQIEEPTAY
CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
EHFNAFFTRALKDGARPLDSTPGAILNPCDGAISQLGKIEQGRIFQAKGHSFSAMELLGG
HHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHCC
DHERAAPFMGGAFATVYLSPKDYHRVHMPVSGTLREMVYVPGRIFSVNTVTAQGVPELFA
CCHHCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHC
RNERVVCLFDTEHGPMAMVLVGAMIVASIETVWAGLVTPPKRSLKTFRYDEAARAPIHLE
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEC
KGAEMGRFKLGSTVILLFGPDRVRWAEQLGPLSPVCMGESLGQAAITAAASEAIELQ
CCCCCCEEEECCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKDRLFVISQYVLPHHLISRLAGCLAECRLPWVKNTFIKWFVRHFQVDMREAQIEEPTAY
CCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
EHFNAFFTRALKDGARPLDSTPGAILNPCDGAISQLGKIEQGRIFQAKGHSFSAMELLGG
HHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHCC
DHERAAPFMGGAFATVYLSPKDYHRVHMPVSGTLREMVYVPGRIFSVNTVTAQGVPELFA
CCHHCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHCCCCEEEEEEEEECCCCHHHHC
RNERVVCLFDTEHGPMAMVLVGAMIVASIETVWAGLVTPPKRSLKTFRYDEAARAPIHLE
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEC
KGAEMGRFKLGSTVILLFGPDRVRWAEQLGPLSPVCMGESLGQAAITAAASEAIELQ
CCCCCCEEEECCEEEEEECCCHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA