Click here to switch to the map view.

The map label for this gene is yraR [H]

Identifier: 146284104

GI number: 146284104

Start: 4099155

End: 4099796

Strand: Direct

Name: yraR [H]

Synonym: PST_3792

Alternate gene names: 146284104

Gene position: 4099155-4099796 (Clockwise)

Preceding gene: 146284103

Following gene: 146284107

Centisome position: 89.75

GC content: 67.13

Gene sequence:

>642_bases
ATGTATTTGACGCCACAGCGCATTCTGCTTGCCGGCGCCACCGGACTCACTGGCGAGCATCTGCTCGATCGACTGCTCAA
CGAACCCACCGTCGAGCGCGTGCTGGCGCCCACGCGCAAGCCGCTGGCCGCGCATCAGCGCCTGGAAAACCCGGTCGGCG
AGCTGCTGGCGCTGCTGCCGACGCTGAGCGGCACGATCGACACGGCCTTCTGCTGCCTGGGCAGCACGCTCAAGCAGGCC
GGCAGCCAGGAGGCCTTCCGCGCCATCGATCATGACCTGGTGCTGGCATTCGCCCGCCGCGCCAAGGAAATGGGGGCCCG
CCATCTGCTGGTGATCAGCTCGCTCGGCGCCAACCCGGACAGCTCGATCTTCTACCTCAAGGTCAAGGGCGAGATGGAAG
CGGCGCTGCAGCAGCAGGACTGGCCGCAGCTGACCATCGCGCGCCCGTCGCAACTGCTCGGCCCGCGTCTGGAAATGCGC
CTGAGCGAACGCATCGCCGCGCCGCTGTCGCAACTCTTGCCAGGCAAGTACCACGGTATCGAAGCCTGCACCCTGGCGCG
GGCGCTCTGGCGCCTGGCGCTGGAGGAAGGCGATGGCGTGCGCATCGTCGAGTCGGACGAACTGCGCAAGTTGGGGAAAT
AA

Upstream 100 bases:

>100_bases
GCATCGGAACCGCAATTATGGGCACCTGAACCGGTCGTCCAGCGCTGGCAGGAACTGCAGCAGCGGCGCGCCGCCCAATG
ATCGCCACAGGAGCACAACC

Downstream 100 bases:

>100_bases
CAGGCGGGAAGCTGCAAGCGGCGTAGCGTGGATGTCGTTTCTCGCATCGACGCTACGCCCATCAGGTTTTTTCTGCGGCT
TGTGGCTTGCCGCTGAAGCG

Product: nucleoside-diphosphate-sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MYLTPQRILLAGATGLTGEHLLDRLLNEPTVERVLAPTRKPLAAHQRLENPVGELLALLPTLSGTIDTAFCCLGSTLKQA
GSQEAFRAIDHDLVLAFARRAKEMGARHLLVISSLGANPDSSIFYLKVKGEMEAALQQQDWPQLTIARPSQLLGPRLEMR
LSERIAAPLSQLLPGKYHGIEACTLARALWRLALEEGDGVRIVESDELRKLGK

Sequences:

>Translated_213_residues
MYLTPQRILLAGATGLTGEHLLDRLLNEPTVERVLAPTRKPLAAHQRLENPVGELLALLPTLSGTIDTAFCCLGSTLKQA
GSQEAFRAIDHDLVLAFARRAKEMGARHLLVISSLGANPDSSIFYLKVKGEMEAALQQQDWPQLTIARPSQLLGPRLEMR
LSERIAAPLSQLLPGKYHGIEACTLARALWRLALEEGDGVRIVESDELRKLGK
>Mature_213_residues
MYLTPQRILLAGATGLTGEHLLDRLLNEPTVERVLAPTRKPLAAHQRLENPVGELLALLPTLSGTIDTAFCCLGSTLKQA
GSQEAFRAIDHDLVLAFARRAKEMGARHLLVISSLGANPDSSIFYLKVKGEMEAALQQQDWPQLTIARPSQLLGPRLEMR
LSERIAAPLSQLLPGKYHGIEACTLARALWRLALEEGDGVRIVESDELRKLGK

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=221, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728168, Length=221, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728164, Length=221, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728166, Length=221, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI87082218, Length=207, Percent_Identity=47.8260869565217, Blast_Score=186, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI71983631, Length=202, Percent_Identity=29.2079207920792, Blast_Score=91, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6320840, Length=159, Percent_Identity=34.5911949685535, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23359; Mature: 23359

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLTPQRILLAGATGLTGEHLLDRLLNEPTVERVLAPTRKPLAAHQRLENPVGELLALLP
CCCCCHHHEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHH
TLSGTIDTAFCCLGSTLKQAGSQEAFRAIDHDLVLAFARRAKEMGARHLLVISSLGANPD
HHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCC
SSIFYLKVKGEMEAALQQQDWPQLTIARPSQLLGPRLEMRLSERIAAPLSQLLPGKYHGI
CCEEEEEECCHHHHHHHHCCCCCEEECCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCH
EACTLARALWRLALEEGDGVRIVESDELRKLGK
HHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCC
>Mature Secondary Structure
MYLTPQRILLAGATGLTGEHLLDRLLNEPTVERVLAPTRKPLAAHQRLENPVGELLALLP
CCCCCHHHEEECCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHH
TLSGTIDTAFCCLGSTLKQAGSQEAFRAIDHDLVLAFARRAKEMGARHLLVISSLGANPD
HHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCC
SSIFYLKVKGEMEAALQQQDWPQLTIARPSQLLGPRLEMRLSERIAAPLSQLLPGKYHGI
CCEEEEEECCHHHHHHHHCCCCCEEECCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCH
EACTLARALWRLALEEGDGVRIVESDELRKLGK
HHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]