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The map label for this gene is ycjZ [C]

Identifier: 146283674

GI number: 146283674

Start: 3633082

End: 3633888

Strand: Direct

Name: ycjZ [C]

Synonym: PST_3357

Alternate gene names: 146283674

Gene position: 3633082-3633888 (Clockwise)

Preceding gene: 146283673

Following gene: 146283676

Centisome position: 79.54

GC content: 60.72

Gene sequence:

>807_bases
ATGTCGCAGCCGGCCTTGAGTCGCGCCATGCGCCAGCTGGAAGAGCGCCTCGGCGTTAGGCTACTCGCGCGCACCACTCG
CAGCGTTGCCCCCACGGAGGCAGGAGAACATCTGCTGCGGGTGGTCGCGCCCAGATTCGAAGAAATCGACAGCGAGCTGG
GATTGCTCAGCGAGTTTCGTGACAAGCCGGCGGGCAAGCTGCGCCTCACCGCTGGCGAGCATGCGGCGATCACTATCCTG
CAACCCGTACTGGCAACGCTGCTACCGGATAATCCGGATCTGAGCATCGAGGTCATCGTCGACTACGGTCTGACCGATAT
CGTGGCGGAAGGCTACGACGCCGGCGTACGGCTAGGTCAACAAGTGGCCAAGGACATGATTGCGATGCGCATCGGCCCAG
ATATGCGCATGGCTGTCGTCGGCTCCCCGGCGTATTTCGCTAGGCATCCGCAACCAGTAATTCCGCGTGACCTGATGCAG
CACAATTGCATCAACATCCGCATGCCCACCTACGGCGGCATCTTCCCTTGGGAATTCGAGAAGAACGGAGAGGAACTCAA
GGTACGAGTTGAGGGCCAACTGGTGTTCAACAACATCGCCATGCGCCTGGGGGCAGCCCTCCAGGGGTTAGGTTTGGCCT
ACATGGCCGAAGACCTAGTGCAGGCGCATGTAGCTGAAGGCCGGCTGATTCGCGTGCTTGAAGACTGGTGCGAGCCCTTC
TCGGGCTACCACCTCTATTACCCGAGCCGGCGACAGAGTTCACCGGCTTTTACCTTGCTGCGCGATGCCCTGCGTTATCC
GGGCTAA

Upstream 100 bases:

>100_bases
CAGGTGTGCATTAATGGCCACTGAAAGCTACGACCAGCTCGCGATCTTTGCAGCCGTGGCGCAGGAGCGTAGTTTCACGC
GCGCCGCTGCCAAGCTAGGT

Downstream 100 bases:

>100_bases
ACCGAAAACATCACTGCGCTGGGGCTTCGACCCCGCTATAGGCGAGCACAGCCGGTGGTAGCCGTTCACCTTGGATGCTG
ATTTCAGCCAAGGCCGCATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFRDKPAGKLRLTAGEHAAITIL
QPVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQQVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQ
HNCINIRMPTYGGIFPWEFEKNGEELKVRVEGQLVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLEDWCEPF
SGYHLYYPSRRQSSPAFTLLRDALRYPG

Sequences:

>Translated_268_residues
MSQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFRDKPAGKLRLTAGEHAAITIL
QPVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQQVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQ
HNCINIRMPTYGGIFPWEFEKNGEELKVRVEGQLVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLEDWCEPF
SGYHLYYPSRRQSSPAFTLLRDALRYPG
>Mature_267_residues
SQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFRDKPAGKLRLTAGEHAAITILQ
PVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQQVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQH
NCINIRMPTYGGIFPWEFEKNGEELKVRVEGQLVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLEDWCEPFS
GYHLYYPSRRQSSPAFTLLRDALRYPG

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=268, Percent_Identity=50.7462686567164, Blast_Score=285, Evalue=3e-78,
Organism=Escherichia coli, GI1787128, Length=265, Percent_Identity=38.4905660377359, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI1786401, Length=257, Percent_Identity=26.4591439688716, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693193, Length=254, Percent_Identity=31.1023622047244, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081978, Length=266, Percent_Identity=27.8195488721804, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789440, Length=247, Percent_Identity=24.6963562753036, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789639, Length=250, Percent_Identity=27.2, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786448, Length=266, Percent_Identity=24.0601503759398, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29875; Mature: 29744

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKPAGKLRLTAGEHAAITILQPVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQ
CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHHH
QVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQHNCINIRMPTYGGIFPWEFE
HHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCEEEC
KNGEELKVRVEGQLVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLEDWCEPF
CCCCEEEEEEECEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
SGYHLYYPSRRQSSPAFTLLRDALRYPG
CCEEEECCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQPALSRAMRQLEERLGVRLLARTTRSVAPTEAGEHLLRVVAPRFEEIDSELGLLSEFR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKPAGKLRLTAGEHAAITILQPVLATLLPDNPDLSIEVIVDYGLTDIVAEGYDAGVRLGQ
CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHHH
QVAKDMIAMRIGPDMRMAVVGSPAYFARHPQPVIPRDLMQHNCINIRMPTYGGIFPWEFE
HHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCEEEC
KNGEELKVRVEGQLVFNNIAMRLGAALQGLGLAYMAEDLVQAHVAEGRLIRVLEDWCEPF
CCCCEEEEEEECEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
SGYHLYYPSRRQSSPAFTLLRDALRYPG
CCEEEECCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]