Click here to switch to the map view.

The map label for this gene is yagA [C]

Identifier: 146283664

GI number: 146283664

Start: 3624058

End: 3624858

Strand: Direct

Name: yagA [C]

Synonym: PST_3347

Alternate gene names: 146283664

Gene position: 3624058-3624858 (Clockwise)

Preceding gene: 146283663

Following gene: 146283665

Centisome position: 79.35

GC content: 58.18

Gene sequence:

>801_bases
ATGGCGCAGCGTGCAGTTCGCTCTGGTCGAGCTAGCATCAAGCTGGCATGCCAGGCCTTCGGGGTTAGCGTCACCTGCTA
TCGCTACCAGCCACGGTTGTCCTCGGAAAATGCCGAGATCGCCGACCACCTGATCCGGCTTACGCACAACCAGCGCAACT
GGGGTTTCGGCCTGTGCTTCCTGTATTTGCGCAACGTGAAAGGCCACCGCTGGAATCACAAGCGGGTGTACCGGATTTAT
CGCGAGCTGGAGCTGAACCTGCGAATCAAGCCGCGCAAACGCATCGTGCGTGAGAAGCCCGAGTCTCTGGCTGTGCCGGA
GGCGATCAATCACTGTTGGTCGATGGACTTCATGCATGACCAACTGGCAGACGGTCGCAGCTTCCGCCTGTTTAACCTGA
TCGACGACTTCAACCGCGAAGCCCTGGCCATGGATATAGACCTATCACTGCCAGCAGAGCGGGTGGTGCGTGCGCTGGAT
CAGGTGATCGAATGGCGTGGCAAACCCCGGTCGATTCGCAGTGACAACGGCCCGGAATACATCAGCAGCAAGCTTGTGCT
GTGGGCAGAGAAGCATGGCATCCGCCTAGAACATATCCAGCCCGGCAATCCCCAGCAGAATGCCTACGTCGAACGCTACA
ACCGCACGGTACGTTATGACTGGCTGGGGCATTACCTGTTCGAGTCCATCGCTGAGGTGCAAGAACACGCCACACGATGG
ATCTGGACATACAATCATGAGCGACCAAATATGGCCCTGGGAGGCATCACCCCCAAACAGAAGTTGGCCCTCGCGGCCTG
A

Upstream 100 bases:

>100_bases
ACCGTCGCCTCAAGAAGATGTACGCCGAAGAGCGCCTGAAGGCCGAGATCATCCAGGAAGCGATGGCAAAAAAGTGGTGA
AGCCATCTCGGCGGCGAGAG

Downstream 100 bases:

>100_bases
CCTCTACTTCTGGTGAGTACTAAAAATGGGTGGATTACCGAGGAAAAACTCCGCAATTTGATGGGGCAATATGACGTAGG
CCTGCGCGAAATTATTTCAA

Product: ISxac2 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MAQRAVRSGRASIKLACQAFGVSVTCYRYQPRLSSENAEIADHLIRLTHNQRNWGFGLCFLYLRNVKGHRWNHKRVYRIY
RELELNLRIKPRKRIVREKPESLAVPEAINHCWSMDFMHDQLADGRSFRLFNLIDDFNREALAMDIDLSLPAERVVRALD
QVIEWRGKPRSIRSDNGPEYISSKLVLWAEKHGIRLEHIQPGNPQQNAYVERYNRTVRYDWLGHYLFESIAEVQEHATRW
IWTYNHERPNMALGGITPKQKLALAA

Sequences:

>Translated_266_residues
MAQRAVRSGRASIKLACQAFGVSVTCYRYQPRLSSENAEIADHLIRLTHNQRNWGFGLCFLYLRNVKGHRWNHKRVYRIY
RELELNLRIKPRKRIVREKPESLAVPEAINHCWSMDFMHDQLADGRSFRLFNLIDDFNREALAMDIDLSLPAERVVRALD
QVIEWRGKPRSIRSDNGPEYISSKLVLWAEKHGIRLEHIQPGNPQQNAYVERYNRTVRYDWLGHYLFESIAEVQEHATRW
IWTYNHERPNMALGGITPKQKLALAA
>Mature_265_residues
AQRAVRSGRASIKLACQAFGVSVTCYRYQPRLSSENAEIADHLIRLTHNQRNWGFGLCFLYLRNVKGHRWNHKRVYRIYR
ELELNLRIKPRKRIVREKPESLAVPEAINHCWSMDFMHDQLADGRSFRLFNLIDDFNREALAMDIDLSLPAERVVRALDQ
VIEWRGKPRSIRSDNGPEYISSKLVLWAEKHGIRLEHIQPGNPQQNAYVERYNRTVRYDWLGHYLFESIAEVQEHATRWI
WTYNHERPNMALGGITPKQKLALAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=280, Percent_Identity=27.5, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31317; Mature: 31186

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQRAVRSGRASIKLACQAFGVSVTCYRYQPRLSSENAEIADHLIRLTHNQRNWGFGLCF
CCCHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH
LYLRNVKGHRWNHKRVYRIYRELELNLRIKPRKRIVREKPESLAVPEAINHCWSMDFMHD
HHHHHCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
QLADGRSFRLFNLIDDFNREALAMDIDLSLPAERVVRALDQVIEWRGKPRSIRSDNGPEY
HHCCCCCEEEEHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
ISSKLVLWAEKHGIRLEHIQPGNPQQNAYVERYNRTVRYDWLGHYLFESIAEVQEHATRW
HHCCEEEEECCCCCEEEEECCCCCCCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHEE
IWTYNHERPNMALGGITPKQKLALAA
EEEECCCCCCEEECCCCCHHHHCCCC
>Mature Secondary Structure 
AQRAVRSGRASIKLACQAFGVSVTCYRYQPRLSSENAEIADHLIRLTHNQRNWGFGLCF
CCHHHHCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH
LYLRNVKGHRWNHKRVYRIYRELELNLRIKPRKRIVREKPESLAVPEAINHCWSMDFMHD
HHHHHCCCCCCCHHHHHHHHHHHHCCEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
QLADGRSFRLFNLIDDFNREALAMDIDLSLPAERVVRALDQVIEWRGKPRSIRSDNGPEY
HHCCCCCEEEEHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
ISSKLVLWAEKHGIRLEHIQPGNPQQNAYVERYNRTVRYDWLGHYLFESIAEVQEHATRW
HHCCEEEEECCCCCEEEEECCCCCCCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHEE
IWTYNHERPNMALGGITPKQKLALAA
EEEECCCCCCEEECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]