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The map label for this gene is xerD [C]

Identifier: 146283660

GI number: 146283660

Start: 3619731

End: 3621071

Strand: Direct

Name: xerD [C]

Synonym: PST_3343

Alternate gene names: 146283660

Gene position: 3619731-3621071 (Clockwise)

Preceding gene: 146283659

Following gene: 146283661

Centisome position: 79.25

GC content: 57.64

Gene sequence:

>1341_bases
ATGCTGTGGCACCGCCACAGGATCCAGGCACGCTCAGCGTTGCTGAATGCGCTCGGGAGCGTTCTGCCCGACGCGCAGAA
AGCCAAGCTTGAAACCCTCTTTACGCAACCCTCCGTCAACGATCGCATTGTCTCGCCGGCGCGTGGTTCAAACGCAGGGT
TGAGCCTCGCAGCTTTGGTAAAGGAATACGAAGAACGGCAAATTCGTGAAGGCGCCTGGGCTAACCCGCGGACTCGCATT
ACCGCAAAGGCCCGCCTGGAAGGCCTGTGCGAGCTGCTTGGCGGGCACCGGCAAGTCGAGACGCTGACTCGCGCTGAATT
CAACACGCTACGCGATCATCTGCGTAGCTATCCGAAGAACCGGCATCGCCTCCGTGCCACGCGTAACCAGCCGCTAAGTA
AGATCATTAGCGACGGTAAGTTCGAGCCAATCAACCCTCGCACTGCGAAAAAGTTTTTTGAGCTGGCAAGGGCCCTTGTC
ACCTACGCTCATGATCAGGGTTACATCACCGAAAATATCGCGGCCGGATTGGCATTCAGCACCAAAGGAGCCGAGGCGCC
GAGGAAGCGCACGTATAGCCCAAGCCAGATCGAGAAACTTCTTCACGGTCCGGCCTACACACTGACCACGCCGCCGCGCT
GGCGCTTGGATGACTACAAGTTTTGGCTGCCGCTGCTTGGCCTTTTTACAGGCGCAAGGCTAAGTGAGCTGTGCCAGCTA
CGGCTCGAAGACATTCGGCAAGAACTCGGCGTCTGGCTCATCAGCATCAATCGAAGCGGGTCGAAACAGCTGAAGACGTC
CGATTCGGAAAGGTTGGTGCCGATTCACCGGCAGCTTATCGAGTCGGGCTTCCTGGAGTTTCATCAAGCACGCCTGGAAG
CTGTCGAGCGAGACGGCAAGGCTCCGCTTTTCGACAATATTCGGGTATACGGCGACCTTTCTCCCGGGCATGTTGCGAGC
CGTTGGTTTCTCGGCTCAAGCCAGATTAGCCGGGGTTACCTTGGGCTTTGCGGCCTGGGAGATGACGGCCTGACGTACCA
CGGTCTGCGCCACACCTTTATCAATCAATTTCGCAGACAGAACCTTGACCTGGCGAAAGCCAAAGCGCTTGTAGGCCACT
CGGATAAAAGTACCACCGGTGGGTACGGCGACTGCTATCCGTCTGACGTGCTCAAAGACGAGCTCGACAAGCTCGATTTC
GGGCTAGGGCTGGGACACATCCATTACCGGCACTATCAAGAGTTACGAGAACGCCAGGGCGTTTTCAATGTCGGTCGCCC
GGTTGGCACCCCCTTCCCCAGCGTGCGGGTTGCTAAGCGACACTGGAAAACGTACGCATAA

Upstream 100 bases:

>100_bases
CAAGCCATGCAGGAAATCGGTGACCTGGTTCGGCGGATGTTGGGTTCTGCTGCAACCGCCGAGCCTATGCAGACGATTCC
GGAGCTGAACTCGCCGACAG

Downstream 100 bases:

>100_bases
TATTCAGCTAATAAAAGGTAGGGGCTCGCTCTTACCTTTTGCTCATCTTGCGATTATTGACAAGTTGTCAATAAAAACTA
TCGCATGGTAAATCCTAATA

Product: integrase

Products: NA

Alternate protein names: Integrase; Phage Integrase; Phage-Related Integrase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase; Phage Integerase; Integrase/Resolvase Recombinase Protein; Site-Specific Recombinase Phage Integrase Family Protein; Integrase Domain-Containing Protein; Phage Integrase Family Recombinase Protein; Prolidase (Xaa-Pro Dipeptidase

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MLWHRHRIQARSALLNALGSVLPDAQKAKLETLFTQPSVNDRIVSPARGSNAGLSLAALVKEYEERQIREGAWANPRTRI
TAKARLEGLCELLGGHRQVETLTRAEFNTLRDHLRSYPKNRHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELARALV
TYAHDQGYITENIAAGLAFSTKGAEAPRKRTYSPSQIEKLLHGPAYTLTTPPRWRLDDYKFWLPLLGLFTGARLSELCQL
RLEDIRQELGVWLISINRSGSKQLKTSDSERLVPIHRQLIESGFLEFHQARLEAVERDGKAPLFDNIRVYGDLSPGHVAS
RWFLGSSQISRGYLGLCGLGDDGLTYHGLRHTFINQFRRQNLDLAKAKALVGHSDKSTTGGYGDCYPSDVLKDELDKLDF
GLGLGHIHYRHYQELRERQGVFNVGRPVGTPFPSVRVAKRHWKTYA

Sequences:

>Translated_446_residues
MLWHRHRIQARSALLNALGSVLPDAQKAKLETLFTQPSVNDRIVSPARGSNAGLSLAALVKEYEERQIREGAWANPRTRI
TAKARLEGLCELLGGHRQVETLTRAEFNTLRDHLRSYPKNRHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELARALV
TYAHDQGYITENIAAGLAFSTKGAEAPRKRTYSPSQIEKLLHGPAYTLTTPPRWRLDDYKFWLPLLGLFTGARLSELCQL
RLEDIRQELGVWLISINRSGSKQLKTSDSERLVPIHRQLIESGFLEFHQARLEAVERDGKAPLFDNIRVYGDLSPGHVAS
RWFLGSSQISRGYLGLCGLGDDGLTYHGLRHTFINQFRRQNLDLAKAKALVGHSDKSTTGGYGDCYPSDVLKDELDKLDF
GLGLGHIHYRHYQELRERQGVFNVGRPVGTPFPSVRVAKRHWKTYA
>Mature_446_residues
MLWHRHRIQARSALLNALGSVLPDAQKAKLETLFTQPSVNDRIVSPARGSNAGLSLAALVKEYEERQIREGAWANPRTRI
TAKARLEGLCELLGGHRQVETLTRAEFNTLRDHLRSYPKNRHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELARALV
TYAHDQGYITENIAAGLAFSTKGAEAPRKRTYSPSQIEKLLHGPAYTLTTPPRWRLDDYKFWLPLLGLFTGARLSELCQL
RLEDIRQELGVWLISINRSGSKQLKTSDSERLVPIHRQLIESGFLEFHQARLEAVERDGKAPLFDNIRVYGDLSPGHVAS
RWFLGSSQISRGYLGLCGLGDDGLTYHGLRHTFINQFRRQNLDLAKAKALVGHSDKSTTGGYGDCYPSDVLKDELDKLDF
GLGLGHIHYRHYQELRERQGVFNVGRPVGTPFPSVRVAKRHWKTYA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50516; Mature: 50516

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWHRHRIQARSALLNALGSVLPDAQKAKLETLFTQPSVNDRIVSPARGSNAGLSLAALV
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
KEYEERQIREGAWANPRTRITAKARLEGLCELLGGHRQVETLTRAEFNTLRDHLRSYPKN
HHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH
RHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELARALVTYAHDQGYITENIAAGLAFS
HHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEC
TKGAEAPRKRTYSPSQIEKLLHGPAYTLTTPPRWRLDDYKFWLPLLGLFTGARLSELCQL
CCCCCCCHHCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
RLEDIRQELGVWLISINRSGSKQLKTSDSERLVPIHRQLIESGFLEFHQARLEAVERDGK
HHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APLFDNIRVYGDLSPGHVASRWFLGSSQISRGYLGLCGLGDDGLTYHGLRHTFINQFRRQ
CCCCCCEEEEECCCCCHHHHHHCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
NLDLAKAKALVGHSDKSTTGGYGDCYPSDVLKDELDKLDFGLGLGHIHYRHYQELRERQG
CCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
VFNVGRPVGTPFPSVRVAKRHWKTYA
CCCCCCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MLWHRHRIQARSALLNALGSVLPDAQKAKLETLFTQPSVNDRIVSPARGSNAGLSLAALV
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
KEYEERQIREGAWANPRTRITAKARLEGLCELLGGHRQVETLTRAEFNTLRDHLRSYPKN
HHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH
RHRLRATRNQPLSKIISDGKFEPINPRTAKKFFELARALVTYAHDQGYITENIAAGLAFS
HHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEC
TKGAEAPRKRTYSPSQIEKLLHGPAYTLTTPPRWRLDDYKFWLPLLGLFTGARLSELCQL
CCCCCCCHHCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
RLEDIRQELGVWLISINRSGSKQLKTSDSERLVPIHRQLIESGFLEFHQARLEAVERDGK
HHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APLFDNIRVYGDLSPGHVASRWFLGSSQISRGYLGLCGLGDDGLTYHGLRHTFINQFRRQ
CCCCCCEEEEECCCCCHHHHHHCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
NLDLAKAKALVGHSDKSTTGGYGDCYPSDVLKDELDKLDFGLGLGHIHYRHYQELRERQG
CCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
VFNVGRPVGTPFPSVRVAKRHWKTYA
CCCCCCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA