| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is livM [H]
Identifier: 146283319
GI number: 146283319
Start: 3216919
End: 3218175
Strand: Direct
Name: livM [H]
Synonym: PST_2984
Alternate gene names: 146283319
Gene position: 3216919-3218175 (Clockwise)
Preceding gene: 146283318
Following gene: 146283320
Centisome position: 70.43
GC content: 64.76
Gene sequence:
>1257_bases ATGACCGGCAATCTGCGTATCGCTTTCTTCAGCGCCCTGCTGGTCATCGCCGTGGCGGTGCCGGTGTTCGGCCTGAAGCT CACCACCGTCGGTATCCGCGTCGAGGTGCATGGCGCCGAAGCCGGCACCTTCTGGATCATCGCCGCCTGCGCGGTGGCCA TGTTCGTCTGGCAACTGTTCCGCACGCATCTGGCCGCCGGCTGGGCCGCCAGCCCGAGCCTGCCGAGCGTGCCAGCCGGT GCTGGCAACTTCCTCACCCTGCCCTCGACCCAACGCTGGATCATCCTGGCGCTGGTGCTGGTTGCGCTGGTCTGGCCGTT CTACGGCTCGCGCGGTGCCGTGGACATCGCCACGCTGATCCTGATCTACGTGATGCTCGGCCTCGGCCTGAACATCGTGG TCGGGCTGGCCGGCCTGCTGGACCTGGGTTACGTCGGCTTCTACGCCGTGGGCGCCTACACCTACGCGTTGCTGTCGCAC TACTACGGGGTCGGCTTCTGGACCGCGCTGCCAATCGCCGGAGCGATGGCCGCACTGTTCGGCTTCCTGCTCGGTTTCCC GGTACTGCGTCTACGCGGTGACTACCTGGCCATCGTGACGCTGGGGTTCGGCGAGATCATCCGCATCCTGCTGCGCAACA TGACCAGCATCACCGGCGGCCCCAACGGCATCAGCGGCATCGACAAGCCAACCTTCTTCGGCCTGTCGTTCGACCGCCGC GCCGCCGAAGGCATGCAGACCTTCCATGAGTACTTCGGCATCGCCTACAACTCGGTGAACAAGGTGATCTTCCTCTACCT GATCGCCCTGCTGCTGGTACTGCTGACCCTGTTCGTGATCAACCGGCTGCTGCGCATGCCGATCGGCCGCGCCTGGGAAG CCCTGCGCGAAGACGAGATCGCCTGCCGCGCACTCGGCATGAACCCCACGGTGATCAAGCTTTCCGCGTTCACCCTCGGC GCCACCTTCGCCGGGTTCGCCGGCAGCTTCTTCGCTGCACGCCAGGGGCTGGTCTCGCCGGAGTCATTCACCTTTATCGA GTCGGCGATCATTCTCGCCATCGTCGTGCTGGGTGGCATGGGCTCGCAGCTCGGCGTGATTCTCGCAGCCATCGTGATGA TCCTGCTGCCCGAGCTGATGCGCGAGTTCAGCGAATACCGCATGTTGATGTTCGGCGCCCTGATGGTGCTGATGATGATC TGGCGTCCGCAAGGCCTGCTGCCGATGCAACGCCCGCACCTGGAGCTGAAGCAATGA
Upstream 100 bases:
>100_bases TCGGCGATCAGTACAAGGACGTCGTGGCCTTCAGCCTGCTCGTGCTCGTGCTGCTGTTCCGCCCCACCGGCATCCTTGGC CGCCCGGAGGTGGAAAAGGT
Downstream 100 bases:
>100_bases GCCGCCCGATCCTGGAAGTACGCGGCCTGACCATGCGCTTCGGCGGCCTGCTGGCCGTCAACGAGGTGGCGCTGACCGTA CACGACAAGCAGGTGGTTTC
Product: leucine/isoleucine/valine transporter permease subunit
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MTGNLRIAFFSALLVIAVAVPVFGLKLTTVGIRVEVHGAEAGTFWIIAACAVAMFVWQLFRTHLAAGWAASPSLPSVPAG AGNFLTLPSTQRWIILALVLVALVWPFYGSRGAVDIATLILIYVMLGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLSH YYGVGFWTALPIAGAMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTSITGGPNGISGIDKPTFFGLSFDRR AAEGMQTFHEYFGIAYNSVNKVIFLYLIALLLVLLTLFVINRLLRMPIGRAWEALREDEIACRALGMNPTVIKLSAFTLG ATFAGFAGSFFAARQGLVSPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMI WRPQGLLPMQRPHLELKQ
Sequences:
>Translated_418_residues MTGNLRIAFFSALLVIAVAVPVFGLKLTTVGIRVEVHGAEAGTFWIIAACAVAMFVWQLFRTHLAAGWAASPSLPSVPAG AGNFLTLPSTQRWIILALVLVALVWPFYGSRGAVDIATLILIYVMLGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLSH YYGVGFWTALPIAGAMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTSITGGPNGISGIDKPTFFGLSFDRR AAEGMQTFHEYFGIAYNSVNKVIFLYLIALLLVLLTLFVINRLLRMPIGRAWEALREDEIACRALGMNPTVIKLSAFTLG ATFAGFAGSFFAARQGLVSPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMI WRPQGLLPMQRPHLELKQ >Mature_417_residues TGNLRIAFFSALLVIAVAVPVFGLKLTTVGIRVEVHGAEAGTFWIIAACAVAMFVWQLFRTHLAAGWAASPSLPSVPAGA GNFLTLPSTQRWIILALVLVALVWPFYGSRGAVDIATLILIYVMLGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLSHY YGVGFWTALPIAGAMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTSITGGPNGISGIDKPTFFGLSFDRRA AEGMQTFHEYFGIAYNSVNKVIFLYLIALLLVLLTLFVINRLLRMPIGRAWEALREDEIACRALGMNPTVIKLSAFTLGA TFAGFAGSFFAARQGLVSPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMIW RPQGLLPMQRPHLELKQ
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=419, Percent_Identity=62.7684964200477, Blast_Score=451, Evalue=1e-128,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 45346; Mature: 45215
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGNLRIAFFSALLVIAVAVPVFGLKLTTVGIRVEVHGAEAGTFWIIAACAVAMFVWQLF CCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH RTHLAAGWAASPSLPSVPAGAGNFLTLPSTQRWIILALVLVALVWPFYGSRGAVDIATLI HHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LIYVMLGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLSHYYGVGFWTALPIAGAMAALF HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTSITGGPNGISGIDKPTFFGLSFDRR HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHH AAEGMQTFHEYFGIAYNSVNKVIFLYLIALLLVLLTLFVINRLLRMPIGRAWEALREDEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ACRALGMNPTVIKLSAFTLGATFAGFAGSFFAARQGLVSPESFTFIESAIILAIVVLGGM HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC GSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMIWRPQGLLPMQRPHLELKQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TGNLRIAFFSALLVIAVAVPVFGLKLTTVGIRVEVHGAEAGTFWIIAACAVAMFVWQLF CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH RTHLAAGWAASPSLPSVPAGAGNFLTLPSTQRWIILALVLVALVWPFYGSRGAVDIATLI HHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LIYVMLGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLSHYYGVGFWTALPIAGAMAALF HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTSITGGPNGISGIDKPTFFGLSFDRR HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHH AAEGMQTFHEYFGIAYNSVNKVIFLYLIALLLVLLTLFVINRLLRMPIGRAWEALREDEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH ACRALGMNPTVIKLSAFTLGATFAGFAGSFFAARQGLVSPESFTFIESAIILAIVVLGGM HHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC GSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMIWRPQGLLPMQRPHLELKQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]