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The map label for this gene is ysgA [H]

Identifier: 146283285

GI number: 146283285

Start: 3176353

End: 3177078

Strand: Direct

Name: ysgA [H]

Synonym: PST_2950

Alternate gene names: 146283285

Gene position: 3176353-3177078 (Clockwise)

Preceding gene: 146283284

Following gene: 146283286

Centisome position: 69.54

GC content: 62.12

Gene sequence:

>726_bases
ATGAAATTCGAAGACATCAAAAAGCTGCACCAGAAAAAGTACCGGGCCGAGTTCGGGCTTTTTCTGGTGGAGGGCGAGCA
TCTGGTGCTGGAGCTGCAGAAAGCGGCCCTGCTCAACCCGCTGCTGCAGGGCAGCGAGCTGTATGTGACCAATGCCTACG
AACAATGGCAGAGCCCGTTCAAGACCCACCTGATCAGTGACCGCCAGATGGCGCAGATCGCCGACACCAAGACCCCGCAA
GGCATCGTGGCACTGGTGCCGATGCCGGATGCGCCTGTCTCGGCACCTGTCGCAGGCGAACGCGCCATCTACCTGCATGA
AATCCAGGACCCGGGCAACCTCGGCACCATCCTGCGCACGCTGGCCTGGTTCGGCAACTTCCGCTGCCTGCTCAGCCCCG
GCAGCGTCGACCCGTACAACCCCAAGGTCGTGCGCTCGAGCATGGGCGCCATCTTCCATGCGCCGATGGAACTGGATGTG
GCACTGGATTCGTTGCGCACGCGCTTTGCCCGCATCGCCTGCCTGGATATGCAGGGTGAGCCTGTGCAATCGACGGCTTT
CACAACCTTCGAATGCTACCTGTTCGGCAATGAAGCCCGCGGCGTGCCCCGCGACCAGCTGAATGCACTCGGCGCCCGGC
CATTCACCATCCCCGGTTGCGGCGCCATCGAATCGCTGAATCTGGCCGCCACGGTCAACATGTGTGCGTACGAGCTCAGC
CGATAG

Upstream 100 bases:

>100_bases
CGGCGGGCGTGGACGGCATCAAGGTCGCCGAGGCGCTGGCCAAGGCGATGCTGGCGGAAGCGGGACAGACTGACGTGCAG
AGCCACTGAGCGCCGCCTTG

Downstream 100 bases:

>100_bases
CGCTTTCGAAACGCCTCTTCGCGTTCCGTCGATCAGGCAAAGCCGCCCGATCAGCGGGCCGCGAAAGCCGGAACACAGCC
AGCGGGACATTGCCCCCTTT

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKFEDIKKLHQKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPFKTHLISDRQMAQIADTKTPQ
GIVALVPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDV
ALDSLRTRFARIACLDMQGEPVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELS
R

Sequences:

>Translated_241_residues
MKFEDIKKLHQKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPFKTHLISDRQMAQIADTKTPQ
GIVALVPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDV
ALDSLRTRFARIACLDMQGEPVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELS
R
>Mature_241_residues
MKFEDIKKLHQKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPFKTHLISDRQMAQIADTKTPQ
GIVALVPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDV
ALDSLRTRFARIACLDMQGEPVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELS
R

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: NA

Molecular weight: Translated: 26671; Mature: 26671

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFEDIKKLHQKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPF
CCHHHHHHHHHHHHHHHHCEEEEECCEEEEEEHHHHHHHHHHCCCEEEEECCHHHHCCHH
KTHLISDRQMAQIADTKTPQGIVALVPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRT
HHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
LAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDVALDSLRTRFARIACLDMQGE
HHHHCCCEEEECCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHEEEECCCCC
PVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELS
CCCCCEEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHCCCCEEEHHHHHHHHC
R
C
>Mature Secondary Structure
MKFEDIKKLHQKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVTNAYEQWQSPF
CCHHHHHHHHHHHHHHHHCEEEEECCEEEEEEHHHHHHHHHHCCCEEEEECCHHHHCCHH
KTHLISDRQMAQIADTKTPQGIVALVPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRT
HHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHH
LAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPMELDVALDSLRTRFARIACLDMQGE
HHHHCCCEEEECCCCCCCCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHEEEECCCCC
PVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELS
CCCCCEEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHCCCCEEEHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]