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The map label for this gene is ybfI [H]

Identifier: 146283260

GI number: 146283260

Start: 3151234

End: 3152082

Strand: Direct

Name: ybfI [H]

Synonym: PST_2925

Alternate gene names: 146283260

Gene position: 3151234-3152082 (Clockwise)

Preceding gene: 146283256

Following gene: 146283263

Centisome position: 68.99

GC content: 68.67

Gene sequence:

>849_bases
GTGAACAACCCGGACGACGACCAACCCCGCTTCTGGCGCGACGACGCCCTGCCCTTCCTGGAAGCGCGCGCCGTCGCCGA
TGGCCGCAAGGTCTGCTATGCCGCGCACTGTCACGAGACCTTTTCCATCGGCGCGATCACTGCCGGCGCCAGCACCTACT
TCAACGGTGACGCCCGCGCACGGATCAGCCGCGGCACCCTGGTGCTGATCAATCCGCAGACCGTGCATGCCTGCAACCCC
ATCGACGGCCAGCCCTGGTCGTACCTGATGTTCTATGTCGATGCGCACTGGCTGGGGGCGCTGCAACACGAGCTGGGGGC
CAGCAGCGATGGCCGCTTCGTGCCCTATGCCGCCATCCAAAGCGCCGACCCGCGGCTGTTCGGTGCACTGACGCAGCTTC
ATGCCTGCCTGACCGATCCGCAGGGCGAGACGCTGCACAAGCAGAGTCTCGCGGTCGAGTTCTTCACCCAGCTGCAACAG
ACGCTGGCCCCGGCTCCGCGCGGGGCGACCAGCGAGCCGCTGCGACAGCTGCGGCGCGCCGCCGACTATATCGCCGAGCA
TTGCACCCAGGCCCTGCGCCTGGAGGACATCTGCCAGGCCGCCGGATTGTCGCCGTCCTACCTGATCCGCGCCTTCAAGC
AGCACTACGGCATGACCCCGCACGCCTATCTGCTCAACCGCCGCATCCAGCGCAGCCAGCACTGGCTGCGCCAGGGGCGT
GAGCTGGCGGAGGTGGCCCTGGCCGCGGGTTTCGCCGATCAGGCGCACTTCCAGCGCACCTTCAAGCGCCAGCTGGCGGC
GACTCCCGGGCAGTACCGCGACCGTGTCGCCAGGGCCGCACGGCACTAG

Upstream 100 bases:

>100_bases
GCGGAAGACGAAGCGGCGAGCCGGACGATCGAGCATGCCAGAGCGGCGGATGATTGCTAGAGTCAGACCTCAGTTTCGTA
TCGATGACGGCAGGCACAAC

Downstream 100 bases:

>100_bases
CCCAGCAGCAGATAGAGCGCGCTGGCGACCAGCAGCAATGCCATGCTGCGATTCAACCAGCGAACCCGCGCCGGTTCCTG
CAGATAGCGACCAAGCAAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNNPDDDQPRFWRDDALPFLEARAVADGRKVCYAAHCHETFSIGAITAGASTYFNGDARARISRGTLVLINPQTVHACNP
IDGQPWSYLMFYVDAHWLGALQHELGASSDGRFVPYAAIQSADPRLFGALTQLHACLTDPQGETLHKQSLAVEFFTQLQQ
TLAPAPRGATSEPLRQLRRAADYIAEHCTQALRLEDICQAAGLSPSYLIRAFKQHYGMTPHAYLLNRRIQRSQHWLRQGR
ELAEVALAAGFADQAHFQRTFKRQLAATPGQYRDRVARAARH

Sequences:

>Translated_282_residues
MNNPDDDQPRFWRDDALPFLEARAVADGRKVCYAAHCHETFSIGAITAGASTYFNGDARARISRGTLVLINPQTVHACNP
IDGQPWSYLMFYVDAHWLGALQHELGASSDGRFVPYAAIQSADPRLFGALTQLHACLTDPQGETLHKQSLAVEFFTQLQQ
TLAPAPRGATSEPLRQLRRAADYIAEHCTQALRLEDICQAAGLSPSYLIRAFKQHYGMTPHAYLLNRRIQRSQHWLRQGR
ELAEVALAAGFADQAHFQRTFKRQLAATPGQYRDRVARAARH
>Mature_282_residues
MNNPDDDQPRFWRDDALPFLEARAVADGRKVCYAAHCHETFSIGAITAGASTYFNGDARARISRGTLVLINPQTVHACNP
IDGQPWSYLMFYVDAHWLGALQHELGASSDGRFVPYAAIQSADPRLFGALTQLHACLTDPQGETLHKQSLAVEFFTQLQQ
TLAPAPRGATSEPLRQLRRAADYIAEHCTQALRLEDICQAAGLSPSYLIRAFKQHYGMTPHAYLLNRRIQRSQHWLRQGR
ELAEVALAAGFADQAHFQRTFKRQLAATPGQYRDRVARAARH

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=216, Percent_Identity=26.8518518518519, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31550; Mature: 31550

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPDDDQPRFWRDDALPFLEARAVADGRKVCYAAHCHETFSIGAITAGASTYFNGDARA
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHCCCHHCCCEEECCCCCEECCCCCE
RISRGTLVLINPQTVHACNPIDGQPWSYLMFYVDAHWLGALQHELGASSDGRFVPYAAIQ
EEECCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
SADPRLFGALTQLHACLTDPQGETLHKQSLAVEFFTQLQQTLAPAPRGATSEPLRQLRRA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ADYIAEHCTQALRLEDICQAAGLSPSYLIRAFKQHYGMTPHAYLLNRRIQRSQHWLRQGR
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ELAEVALAAGFADQAHFQRTFKRQLAATPGQYRDRVARAARH
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNNPDDDQPRFWRDDALPFLEARAVADGRKVCYAAHCHETFSIGAITAGASTYFNGDARA
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHCCCHHCCCEEECCCCCEECCCCCE
RISRGTLVLINPQTVHACNPIDGQPWSYLMFYVDAHWLGALQHELGASSDGRFVPYAAIQ
EEECCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC
SADPRLFGALTQLHACLTDPQGETLHKQSLAVEFFTQLQQTLAPAPRGATSEPLRQLRRA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
ADYIAEHCTQALRLEDICQAAGLSPSYLIRAFKQHYGMTPHAYLLNRRIQRSQHWLRQGR
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ELAEVALAAGFADQAHFQRTFKRQLAATPGQYRDRVARAARH
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]