| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
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The map label for this gene is ybgL [C]
Identifier: 146283100
GI number: 146283100
Start: 2987616
End: 2988290
Strand: Direct
Name: ybgL [C]
Synonym: PST_2761
Alternate gene names: 146283100
Gene position: 2987616-2988290 (Clockwise)
Preceding gene: 146283087
Following gene: 146283101
Centisome position: 65.41
GC content: 67.26
Gene sequence:
>675_bases ATGCCGTTTATCGACTGCGCCAATATCGCCTGTGGCTTCCATGCCTCCGATCCGCAGATCATGCGGCGCACCGTCGCGCT GGCGCGCCAGCACGACGTGCGCATCGGCGCGCACCCGGCCTATCCGGACCTGGTCGGCTTCGGTCGGCGCTCCATGGCCT GCAGCCCGGCCGAAGTGGAGAACATGCTGCTCTATCAGATCGGTGCGCTCGACGGCATCTGCCGCGCCGAAGGCACGCAG GTCCGCTACGTCAAACCCCACGGCGCGCTCTACAACGACATGATGCGCCAGCCACAGCTGCTGCGCGCGGTCATGACCGC CGTTAAGGCCTACAGTGCCAGCCTGCCGCTGATGCTCATGTCTACCCGCGACAACAGCGAAAGCCAGGCGATGGCGGCGG AAATCGGCATCACCCTGTGGTTCGAGGTGTTCGCCGACCGCGCCTACGACGCCGCCGGCATGCTGGTCTCGCGCAACCTG CCGGGTGCCGTGCACCACGATGCCGAAACGGTGGCCGACCAGGCCCTGCGCCTGGCCAAGGGGGAAGCATTGACCGCCAG CGATGGCAGCGCGCTGATCCTGCAGGCCGATACGCTCTGCGTGCACGGCGACAACGCCGGCTCGATCGCCGCTGTGCAGC GCATTCGTCAGGCACTGCAGGCGCTTCCCGCATGA
Upstream 100 bases:
>100_bases GCCCATCTCGAAAGGAGCAGCCATCGTGAGTCGTCTGTTACTCAATTGCGACATAGGGGAAAGCTTCGGCGCCTGGACCA TGGGCCTGGACGCCGAGGTG
Downstream 100 bases:
>100_bases CGCCGCGGATCGAGGTGGTCGGCATCGATAGCCTGGTGCTGCGCCTGTTCGATCAGATCGACGAGGACAATATGTCGTGG ATGCTGGCCGCCACTCAGCG
Product: putative lactam utilization protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MPFIDCANIACGFHASDPQIMRRTVALARQHDVRIGAHPAYPDLVGFGRRSMACSPAEVENMLLYQIGALDGICRAEGTQ VRYVKPHGALYNDMMRQPQLLRAVMTAVKAYSASLPLMLMSTRDNSESQAMAAEIGITLWFEVFADRAYDAAGMLVSRNL PGAVHHDAETVADQALRLAKGEALTASDGSALILQADTLCVHGDNAGSIAAVQRIRQALQALPA
Sequences:
>Translated_224_residues MPFIDCANIACGFHASDPQIMRRTVALARQHDVRIGAHPAYPDLVGFGRRSMACSPAEVENMLLYQIGALDGICRAEGTQ VRYVKPHGALYNDMMRQPQLLRAVMTAVKAYSASLPLMLMSTRDNSESQAMAAEIGITLWFEVFADRAYDAAGMLVSRNL PGAVHHDAETVADQALRLAKGEALTASDGSALILQADTLCVHGDNAGSIAAVQRIRQALQALPA >Mature_223_residues PFIDCANIACGFHASDPQIMRRTVALARQHDVRIGAHPAYPDLVGFGRRSMACSPAEVENMLLYQIGALDGICRAEGTQV RYVKPHGALYNDMMRQPQLLRAVMTAVKAYSASLPLMLMSTRDNSESQAMAAEIGITLWFEVFADRAYDAAGMLVSRNLP GAVHHDAETVADQALRLAKGEALTASDGSALILQADTLCVHGDNAGSIAAVQRIRQALQALPA
Specific function: Unknown
COG id: COG1540
COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0271 (lamB) family [H]
Homologues:
Organism=Escherichia coli, GI1786931, Length=219, Percent_Identity=40.6392694063927, Blast_Score=153, Evalue=7e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR005501 [H]
Pfam domain/function: PF03746 LamB_YcsF [H]
EC number: NA
Molecular weight: Translated: 24092; Mature: 23961
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFIDCANIACGFHASDPQIMRRTVALARQHDVRIGAHPAYPDLVGFGRRSMACSPAEVE CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHCCCCCCCCCHHHHH NMLLYQIGALDGICRAEGTQVRYVKPHGALYNDMMRQPQLLRAVMTAVKAYSASLPLMLM HHHHHHHHCCCCHHCCCCCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEE STRDNSESQAMAAEIGITLWFEVFADRAYDAAGMLVSRNLPGAVHHDAETVADQALRLAK ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEECCCCCCHHCCHHHHHHHHHHHHC GEALTASDGSALILQADTLCVHGDNAGSIAAVQRIRQALQALPA CCEEECCCCCEEEEEECEEEEECCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure PFIDCANIACGFHASDPQIMRRTVALARQHDVRIGAHPAYPDLVGFGRRSMACSPAEVE CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCEECCCCCCCHHHHCCCCCCCCCHHHHH NMLLYQIGALDGICRAEGTQVRYVKPHGALYNDMMRQPQLLRAVMTAVKAYSASLPLMLM HHHHHHHHCCCCHHCCCCCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEE STRDNSESQAMAAEIGITLWFEVFADRAYDAAGMLVSRNLPGAVHHDAETVADQALRLAK ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEECCCCCCHHCCHHHHHHHHHHHHC GEALTASDGSALILQADTLCVHGDNAGSIAAVQRIRQALQALPA CCEEECCCCCEEEEEECEEEEECCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA