Click here to switch to the map view.

The map label for this gene is dgdR [H]

Identifier: 146283018

GI number: 146283018

Start: 2905589

End: 2906443

Strand: Direct

Name: dgdR [H]

Synonym: PST_2679

Alternate gene names: 146283018

Gene position: 2905589-2906443 (Clockwise)

Preceding gene: 146283016

Following gene: 146283020

Centisome position: 63.62

GC content: 65.85

Gene sequence:

>855_bases
ATGGCGAGCTACCCGAACATCGATACCGAACTGCTGCGCAGCTTCGTCGCCATTGTCGATCACGGCGGCTTTACGCGGGC
CGCAGCCGCGGTCAACCGCACCCAGTCGGCGATCAGCATGCAGATGAAGCGCCTGGAAGAAGATGTGCTCGAACGACCGC
TGTTCGAACGCAGCGGCCGCCAGGTCAGATTGACTGCCGAGGGGCAGATCCTGCTGGGCTATGCCCGGCGCATTCTCAAG
CTGCATGGCGAGGTCATGACCACGCTGCGTCAGCCGCACATGGTCGGCGCGGTCCGGATCGGCACGCCGGACGACTATGT
GATGCGCTTTCTGCCGGGCATCCTGGCCCGCTTCGCCCAGGCCTACCCGCTGGTCCAGGTGGAGGTGCACTGCGAGCCGT
CGAGCCAGCTGCTGCAGCGCCGCGATCTGGACCTGAGCATCATCACTCGTGAGCCGGGTACGGAGATCGGCCAGCTGCTG
CGTCAGGAGTACGTGGTGTGGGCGGCTGCTCCGGGCTTCAACCTGGACGACCAGCGCCCATTGCCGCTGGCCACTTTCAA
TACCGACTGCTTCTGCCGCGCCTGGGTGTGCAACGCGCTGGACGCCCGTGAGATCGATTACCGGATCGCCTATAGCAGCC
CCAGCCTCGCGGCCATCATGGCCATCGTCGGCGCCGGGCTGGCGCTCACCGCCCAACTGCAAAGCCTGATTCCGGCGGAC
CTGCGCATTCTGGGCGAGGCGGATGGGCTGCCGGCGCTACCGCAAACCAGCATCGTGCTGCTGCGTAACCCGCAGCAGCG
TTCGCCGGTCAGCGAGACCCTCGCCGAGTACATCGTCGAGGGTTTCCGTCTGTAG

Upstream 100 bases:

>100_bases
CATCACAGCGCCCTCCTGTTTGGATTGGCGCCAGTCTCGCGCGGCGATTATGATCAATCCAACGAATGTTTCTGATGCCT
GGCATCTTGAGGATTGATGA

Downstream 100 bases:

>100_bases
CGGGCTCAGGGCCGCGTAGCGGCCAGCTCGTCGAACACCTCCGGTACCAGGGCGGCCTCGCCCTTGTCGGCCAGCCGTTG
GCGGGCTCCTGCGGTCTGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MASYPNIDTELLRSFVAIVDHGGFTRAAAAVNRTQSAISMQMKRLEEDVLERPLFERSGRQVRLTAEGQILLGYARRILK
LHGEVMTTLRQPHMVGAVRIGTPDDYVMRFLPGILARFAQAYPLVQVEVHCEPSSQLLQRRDLDLSIITREPGTEIGQLL
RQEYVVWAAAPGFNLDDQRPLPLATFNTDCFCRAWVCNALDAREIDYRIAYSSPSLAAIMAIVGAGLALTAQLQSLIPAD
LRILGEADGLPALPQTSIVLLRNPQQRSPVSETLAEYIVEGFRL

Sequences:

>Translated_284_residues
MASYPNIDTELLRSFVAIVDHGGFTRAAAAVNRTQSAISMQMKRLEEDVLERPLFERSGRQVRLTAEGQILLGYARRILK
LHGEVMTTLRQPHMVGAVRIGTPDDYVMRFLPGILARFAQAYPLVQVEVHCEPSSQLLQRRDLDLSIITREPGTEIGQLL
RQEYVVWAAAPGFNLDDQRPLPLATFNTDCFCRAWVCNALDAREIDYRIAYSSPSLAAIMAIVGAGLALTAQLQSLIPAD
LRILGEADGLPALPQTSIVLLRNPQQRSPVSETLAEYIVEGFRL
>Mature_283_residues
ASYPNIDTELLRSFVAIVDHGGFTRAAAAVNRTQSAISMQMKRLEEDVLERPLFERSGRQVRLTAEGQILLGYARRILKL
HGEVMTTLRQPHMVGAVRIGTPDDYVMRFLPGILARFAQAYPLVQVEVHCEPSSQLLQRRDLDLSIITREPGTEIGQLLR
QEYVVWAAAPGFNLDDQRPLPLATFNTDCFCRAWVCNALDAREIDYRIAYSSPSLAAIMAIVGAGLALTAQLQSLIPADL
RILGEADGLPALPQTSIVLLRNPQQRSPVSETLAEYIVEGFRL

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=272, Percent_Identity=35.6617647058824, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=36.8794326241135, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693105, Length=120, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367136, Length=280, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=240, Percent_Identity=27.0833333333333, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31540; Mature: 31409

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASYPNIDTELLRSFVAIVDHGGFTRAAAAVNRTQSAISMQMKRLEEDVLERPLFERSGR
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
QVRLTAEGQILLGYARRILKLHGEVMTTLRQPHMVGAVRIGTPDDYVMRFLPGILARFAQ
EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
AYPLVQVEVHCEPSSQLLQRRDLDLSIITREPGTEIGQLLRQEYVVWAAAPGFNLDDQRP
HCCEEEEEEEECCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCCC
LPLATFNTDCFCRAWVCNALDAREIDYRIAYSSPSLAAIMAIVGAGLALTAQLQSLIPAD
CCEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHCCHH
LRILGEADGLPALPQTSIVLLRNPQQRSPVSETLAEYIVEGFRL
HEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASYPNIDTELLRSFVAIVDHGGFTRAAAAVNRTQSAISMQMKRLEEDVLERPLFERSGR
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
QVRLTAEGQILLGYARRILKLHGEVMTTLRQPHMVGAVRIGTPDDYVMRFLPGILARFAQ
EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
AYPLVQVEVHCEPSSQLLQRRDLDLSIITREPGTEIGQLLRQEYVVWAAAPGFNLDDQRP
HCCEEEEEEEECCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHEEEEECCCCCCCCCCC
LPLATFNTDCFCRAWVCNALDAREIDYRIAYSSPSLAAIMAIVGAGLALTAQLQSLIPAD
CCEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHCCHH
LRILGEADGLPALPQTSIVLLRNPQQRSPVSETLAEYIVEGFRL
HEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]