Click here to switch to the map view.

The map label for this gene is ycfD [H]

Identifier: 146282655

GI number: 146282655

Start: 2518796

End: 2519962

Strand: Direct

Name: ycfD [H]

Synonym: PST_2307

Alternate gene names: 146282655

Gene position: 2518796-2519962 (Clockwise)

Preceding gene: 146282654

Following gene: 146282656

Centisome position: 55.15

GC content: 61.95

Gene sequence:

>1167_bases
ATGACTTCTGATATTCCACTTCAAATTCTGGGCGGCATCAGTGCTCGGGAATTCCTGCGCGATTACTGGCAGAAGAAGCC
GCTGCTGATCCGCCAGGCCATCCCGGGTTTCCAGAGCCCGATCTCGCCGGACGAACTGGCCGGCCTCTCCCTCGAAGAGG
ACGTCGAGTCCCGTCTGGTCATCGAACACGGCGAAAGCCCCTGGGAGCTGCGCCGAGGCCCATTCACCGAGGACACCTAT
CAGCAGCTGCCGGAGCGTGACTGGACCTTGTTGGTGCAGGCGGTCGACCAGCTCGTGCCGGACGTCGCCGAGCTGATCGA
GCATTTCCGCTTTCTGCCCAACTGGCGCATCGACGATGTGATGATCAGCTATGCCGCTCCGGGTGGCGGCGTCGGACCGC
ACTTCGACAATTACGATGTGTTCCTGCTGCAGGCCCATGGACAGCGCCGCTGGCGCATCGGGCAGATGTGCGACAGCGAA
AGCCCGATGCTGGCCCACGGCGACCTGCGCATTCTCGCCGACTTCCAGGGCACCGAAGAATGGGTGCTGGAGCCGGGCGA
CATGCTCTACCTGCCGCCTCGCCTCGCTCACTTTGGCACCGCCGAGGATGCCTGCATGACGTACTCGGTCGGTTTTCGCG
CACCCAGCGCCGCGGAAGTCCTGACCCATTTCACCGACTTCCTCGCGCAATTCCTACCAGACGAAGAACGCTACAGTGAT
GCCGATCTACAACCCAGCGATGACCCCTTCCAGATCCAGAGCGATGCACTGGACCGTTTGAAGGCATTGCTTGCCGAGCA
CATGAGCGACGAACGCCTCCTGCTTACCTGGTTCGGCCAATTCATGACCGAGCCGCGTTATCCGGAGCGTGTCGAGGGCC
CGGAACTGAGCGAGGACGAGTTGCTGTCGGCGCTGGAGGACGGCGCGATACTGGTTCGCAACCCCGCGGCCCGGCTGGCC
TGGAGCGAGGTGGATATCGGCCTGCTACTGTTCGCCAGTGGCCAGAGCCGCCTGCTTCCCTCTAAGCTGAACGAACTGTT
GAAACTGATCTGCTCGGCCGACGCGCTGCATGTCGAAAACGTCGGTCGATGGCTGAGCGACGAGGATGGCCGGGCGCTGC
TGTGCGAACTGGTAAAACAAGGAAGTCTGGAGTTTGCTGATGAATAG

Upstream 100 bases:

>100_bases
CTGCCCAGGCCAAGCGCATCTGATCGACCCCATGCCTGCACGCCCGGCTGTGCCGGGCGTTTTTATTTTCAGCTCTGCCA
TATAGAGCAAGGTGTTACGC

Downstream 100 bases:

>100_bases
CGTTCAGGTACGGATCGCCGACTGGCAGCAGGACAACGCCGAACTGCGGCGCATCCGCGAGGCCGTATTCATTGCCGAGC
AGGCCGTACCGCCCGAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MTSDIPLQILGGISAREFLRDYWQKKPLLIRQAIPGFQSPISPDELAGLSLEEDVESRLVIEHGESPWELRRGPFTEDTY
QQLPERDWTLLVQAVDQLVPDVAELIEHFRFLPNWRIDDVMISYAAPGGGVGPHFDNYDVFLLQAHGQRRWRIGQMCDSE
SPMLAHGDLRILADFQGTEEWVLEPGDMLYLPPRLAHFGTAEDACMTYSVGFRAPSAAEVLTHFTDFLAQFLPDEERYSD
ADLQPSDDPFQIQSDALDRLKALLAEHMSDERLLLTWFGQFMTEPRYPERVEGPELSEDELLSALEDGAILVRNPAARLA
WSEVDIGLLLFASGQSRLLPSKLNELLKLICSADALHVENVGRWLSDEDGRALLCELVKQGSLEFADE

Sequences:

>Translated_388_residues
MTSDIPLQILGGISAREFLRDYWQKKPLLIRQAIPGFQSPISPDELAGLSLEEDVESRLVIEHGESPWELRRGPFTEDTY
QQLPERDWTLLVQAVDQLVPDVAELIEHFRFLPNWRIDDVMISYAAPGGGVGPHFDNYDVFLLQAHGQRRWRIGQMCDSE
SPMLAHGDLRILADFQGTEEWVLEPGDMLYLPPRLAHFGTAEDACMTYSVGFRAPSAAEVLTHFTDFLAQFLPDEERYSD
ADLQPSDDPFQIQSDALDRLKALLAEHMSDERLLLTWFGQFMTEPRYPERVEGPELSEDELLSALEDGAILVRNPAARLA
WSEVDIGLLLFASGQSRLLPSKLNELLKLICSADALHVENVGRWLSDEDGRALLCELVKQGSLEFADE
>Mature_387_residues
TSDIPLQILGGISAREFLRDYWQKKPLLIRQAIPGFQSPISPDELAGLSLEEDVESRLVIEHGESPWELRRGPFTEDTYQ
QLPERDWTLLVQAVDQLVPDVAELIEHFRFLPNWRIDDVMISYAAPGGGVGPHFDNYDVFLLQAHGQRRWRIGQMCDSES
PMLAHGDLRILADFQGTEEWVLEPGDMLYLPPRLAHFGTAEDACMTYSVGFRAPSAAEVLTHFTDFLAQFLPDEERYSDA
DLQPSDDPFQIQSDALDRLKALLAEHMSDERLLLTWFGQFMTEPRYPERVEGPELSEDELLSALEDGAILVRNPAARLAW
SEVDIGLLLFASGQSRLLPSKLNELLKLICSADALHVENVGRWLSDEDGRALLCELVKQGSLEFADE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=371, Percent_Identity=39.3530997304582, Blast_Score=257, Evalue=9e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43862; Mature: 43731

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDIPLQILGGISAREFLRDYWQKKPLLIRQAIPGFQSPISPDELAGLSLEEDVESRLV
CCCCCCHHHHCCCCHHHHHHHHHHCCCEEHHHHCCCCCCCCCHHHHCCCCHHHHHHHCEE
IEHGESPWELRRGPFTEDTYQQLPERDWTLLVQAVDQLVPDVAELIEHFRFLPNWRIDDV
EECCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
MISYAAPGGGVGPHFDNYDVFLLQAHGQRRWRIGQMCDSESPMLAHGDLRILADFQGTEE
EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCEEECCCEEEEEECCCCHH
WVLEPGDMLYLPPRLAHFGTAEDACMTYSVGFRAPSAAEVLTHFTDFLAQFLPDEERYSD
HEECCCCEEEECCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
ADLQPSDDPFQIQSDALDRLKALLAEHMSDERLLLTWFGQFMTEPRYPERVEGPELSEDE
CCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCHHH
LLSALEDGAILVRNPAARLAWSEVDIGLLLFASGQSRLLPSKLNELLKLICSADALHVEN
HHHHHHCCEEEEECCHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
VGRWLSDEDGRALLCELVKQGSLEFADE
HHHHCCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSDIPLQILGGISAREFLRDYWQKKPLLIRQAIPGFQSPISPDELAGLSLEEDVESRLV
CCCCCHHHHCCCCHHHHHHHHHHCCCEEHHHHCCCCCCCCCHHHHCCCCHHHHHHHCEE
IEHGESPWELRRGPFTEDTYQQLPERDWTLLVQAVDQLVPDVAELIEHFRFLPNWRIDDV
EECCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
MISYAAPGGGVGPHFDNYDVFLLQAHGQRRWRIGQMCDSESPMLAHGDLRILADFQGTEE
EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCCEEECCCEEEEEECCCCHH
WVLEPGDMLYLPPRLAHFGTAEDACMTYSVGFRAPSAAEVLTHFTDFLAQFLPDEERYSD
HEECCCCEEEECCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHCCC
ADLQPSDDPFQIQSDALDRLKALLAEHMSDERLLLTWFGQFMTEPRYPERVEGPELSEDE
CCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCHHH
LLSALEDGAILVRNPAARLAWSEVDIGLLLFASGQSRLLPSKLNELLKLICSADALHVEN
HHHHHHCCEEEEECCHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHH
VGRWLSDEDGRALLCELVKQGSLEFADE
HHHHCCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]