| Definition | Pseudomonas stutzeri A1501, complete genome. |
|---|---|
| Accession | NC_009434 |
| Length | 4,567,418 |
Click here to switch to the map view.
The map label for this gene is tap [C]
Identifier: 146282628
GI number: 146282628
Start: 2489086
End: 2491251
Strand: Direct
Name: tap [C]
Synonym: PST_2280
Alternate gene names: 146282628
Gene position: 2489086-2491251 (Clockwise)
Preceding gene: 146282623
Following gene: 146282629
Centisome position: 54.5
GC content: 62.88
Gene sequence:
>2166_bases ATGCCTCTCAAATCCATCCAGCAGCGAATAGCGGTTATCGGCGGCTTATGCCTGCTGATATCCGCGGGAATCTTGATCGG CTACAGCGTTTATCTGGCCAGTTCCACCCAGCATCTGGTGTCGACCCGTGTCAGCCAGCAGGCACAGGAAGACGCGTTGC AGAACCTGCAACACCTCGCCGGCCAATACGCCGAAGAGATCCGCACCGAGTTCACCGAGGCGCTGGAAACGGCGCGCAGC ATGGCAACCACCTTCGCGGTCGCCAAGTCGAAGGAGAACGGCGGATTGCAGGTCGGCCGCGACGAGGTCAACGCGGTCTT GCTGAACGTGCTGAAGAGTCAGCCGGACTTCAACGGAACCTATTCGTGCTGGGAACCGGACGCGATCGACGGCCAGGACT ACCTCTTCACCGACGGGCAGAACGGCAACAACGCCCAGACCGGACGCTTCACGCCTTACTGGACGCGAAGCGCAGACGGC AAGATCGCCGTCCAGCCATTGGTGGAATACGACACCCAGGACAAGCACCCCAACGGCGTGCTCAAAGGCGGCTGGTACAT CGGCCCGCGGGAAACCCTCAAGGAGAGCGTGCTCGGCCCTCTGCCATATGTCGTACAGGGCAGGCAGGTCTGGTTGGCGA CGCTCTCGGTACCAATCATCGCGGATGGCCGCTTCCTCGGTGTGGCCGGTACCGACTATGACCTCGACTTCGTCCAGCGT ATCAGCCAGGAAGTTTCCGCAAAGCTGTTCGAGGGCCAGGGTGAGGTGGCGATCGTCAGCGATCAGGGCTTGATCGTGGC GGAGAGCCGGTATCCCAACCTGATCGGCCAGCATTTCCAGCAGGTACTGCCGGACACGTGGCGGCCCGCCCTGGATTCGA TCCAGAAAGGCGAACGGCTTGCGCGGCTGGATGACAACGGAATGATGATCGTCCTGGCGCCGATTCACCTGGGCCGCACC GGCAAACCCTGGTCGATGATGCTCAAGATCGACAAGCAGATCGTCCTGGCCAAGGCGACCGAACTCAAGGCCGAGATGGA CGCGCAGAGCCAACGAAGCATGCTGCAGCAGGTCGGCGCCGGGGTCGTCATATCGCTACTCGCAGTGATTGCGCTATGGC TCTCGGCACGCGCGATTGCCCTGCCCATCCGCAGGGCCGCACAACTGGCTGGTGCGATTCAGAAGGGCGACTTCTCGCAG CGCCTGGGGCATCGCTCGGCGGATGAAGTAGGCCAGCTCTCGGCCAGCCTCGATCGCATGGCAGACAGTCTGCAGGAGCA GGTGCATGTCGCCGAACGCATCTCTCAGGGCGACCTGGCGGTGGAGGTCCGTCTGGCATCCGAACGCGACCAGCTGGGCC TTGCCCTTCGACGAATGGTGGACAACCTGAACGAGCTGGTCTCCCAGGTGCAGCTCAGTTCCGGGCTCATCAACGACAAG GCCGGCCAGGTCACCCGTCTGAGCCACGAGCTATCCACCGGCGCGACCGAGTCGGCCTCGGCCGTCACCGAAATCAGCGC CACCATCAACCAGATGGCGGTACAGATCCGTCAGACCTCCGAGTACGCGAACGAAGCCAACAGTCTTTCGCGCAAATCCG AACACTCGGCGCGAGGCGGCAACGAGCTGATGGCGACGTTGAAGGCCGCCATGCAGGAGATCAATCAGTCCGGCCTGGAT ATCACCAACATCATCAGAGCGATCGAGGAGATCGCGACACAGACCAACCTGCTTGCCCTGAACGCGGCCATCGAGGCGGC TCGCGCCGGCGAGCATGGTCGCGGATTCGCCGTGGTCGCGGACGAGGTGCGACAGCTCGCGGCACGCAGTGCCGAGGCCG CGCAACGCTCGACCCGCCTGATTCAGGAATCCAACACGCGGACGGTCAAGGGTATGGAGTTGACCGACGACACCGCGCAA GCGCTGGAGGCCATCGTTCGCGGGGCAGCGCAGGTATCGCAACTCGTGGAAGAGATTGCGCAGGCTTCGAGCCAGCAGGC GTCCGGCATCGAACAGGTCAGCCAGGCCATCGGCCAGATCGATGAAGTGGTGCACCACAACAGTTCGAACTCGGATCAAT CGACCCAGGCGGCTCAGGAACTGACGCAGCAGGCGCGGCAGATGATCGAGCAGGTCGGACGCTTCAAGGTCCGCTCGGTA CGCTAG
Upstream 100 bases:
>100_bases AATTGGACATCACCCATTTCGCGCAACCGCCGAGACGCGATCACGCGCTCGAGGGCTCGCCGCAGCTGTCTTCTCATGCG TTATCAGGAGTCGTACCGTG
Downstream 100 bases:
>100_bases TCGATCAAGGAGAGGCGGCGCCCTTGCGCCGCTTCTCTACTACCTTGGTACCGCCCCGCCGGTACTTTCTGCATATTCCC CCGCTCCGCCATGGTTCCTA
Product: methyl-accepting chemotaxis receptor/sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 721; Mature: 720
Protein sequence:
>721_residues MPLKSIQQRIAVIGGLCLLISAGILIGYSVYLASSTQHLVSTRVSQQAQEDALQNLQHLAGQYAEEIRTEFTEALETARS MATTFAVAKSKENGGLQVGRDEVNAVLLNVLKSQPDFNGTYSCWEPDAIDGQDYLFTDGQNGNNAQTGRFTPYWTRSADG KIAVQPLVEYDTQDKHPNGVLKGGWYIGPRETLKESVLGPLPYVVQGRQVWLATLSVPIIADGRFLGVAGTDYDLDFVQR ISQEVSAKLFEGQGEVAIVSDQGLIVAESRYPNLIGQHFQQVLPDTWRPALDSIQKGERLARLDDNGMMIVLAPIHLGRT GKPWSMMLKIDKQIVLAKATELKAEMDAQSQRSMLQQVGAGVVISLLAVIALWLSARAIALPIRRAAQLAGAIQKGDFSQ RLGHRSADEVGQLSASLDRMADSLQEQVHVAERISQGDLAVEVRLASERDQLGLALRRMVDNLNELVSQVQLSSGLINDK AGQVTRLSHELSTGATESASAVTEISATINQMAVQIRQTSEYANEANSLSRKSEHSARGGNELMATLKAAMQEINQSGLD ITNIIRAIEEIATQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAARSAEAAQRSTRLIQESNTRTVKGMELTDDTAQ ALEAIVRGAAQVSQLVEEIAQASSQQASGIEQVSQAIGQIDEVVHHNSSNSDQSTQAAQELTQQARQMIEQVGRFKVRSV R
Sequences:
>Translated_721_residues MPLKSIQQRIAVIGGLCLLISAGILIGYSVYLASSTQHLVSTRVSQQAQEDALQNLQHLAGQYAEEIRTEFTEALETARS MATTFAVAKSKENGGLQVGRDEVNAVLLNVLKSQPDFNGTYSCWEPDAIDGQDYLFTDGQNGNNAQTGRFTPYWTRSADG KIAVQPLVEYDTQDKHPNGVLKGGWYIGPRETLKESVLGPLPYVVQGRQVWLATLSVPIIADGRFLGVAGTDYDLDFVQR ISQEVSAKLFEGQGEVAIVSDQGLIVAESRYPNLIGQHFQQVLPDTWRPALDSIQKGERLARLDDNGMMIVLAPIHLGRT GKPWSMMLKIDKQIVLAKATELKAEMDAQSQRSMLQQVGAGVVISLLAVIALWLSARAIALPIRRAAQLAGAIQKGDFSQ RLGHRSADEVGQLSASLDRMADSLQEQVHVAERISQGDLAVEVRLASERDQLGLALRRMVDNLNELVSQVQLSSGLINDK AGQVTRLSHELSTGATESASAVTEISATINQMAVQIRQTSEYANEANSLSRKSEHSARGGNELMATLKAAMQEINQSGLD ITNIIRAIEEIATQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAARSAEAAQRSTRLIQESNTRTVKGMELTDDTAQ ALEAIVRGAAQVSQLVEEIAQASSQQASGIEQVSQAIGQIDEVVHHNSSNSDQSTQAAQELTQQARQMIEQVGRFKVRSV R >Mature_720_residues PLKSIQQRIAVIGGLCLLISAGILIGYSVYLASSTQHLVSTRVSQQAQEDALQNLQHLAGQYAEEIRTEFTEALETARSM ATTFAVAKSKENGGLQVGRDEVNAVLLNVLKSQPDFNGTYSCWEPDAIDGQDYLFTDGQNGNNAQTGRFTPYWTRSADGK IAVQPLVEYDTQDKHPNGVLKGGWYIGPRETLKESVLGPLPYVVQGRQVWLATLSVPIIADGRFLGVAGTDYDLDFVQRI SQEVSAKLFEGQGEVAIVSDQGLIVAESRYPNLIGQHFQQVLPDTWRPALDSIQKGERLARLDDNGMMIVLAPIHLGRTG KPWSMMLKIDKQIVLAKATELKAEMDAQSQRSMLQQVGAGVVISLLAVIALWLSARAIALPIRRAAQLAGAIQKGDFSQR LGHRSADEVGQLSASLDRMADSLQEQVHVAERISQGDLAVEVRLASERDQLGLALRRMVDNLNELVSQVQLSSGLINDKA GQVTRLSHELSTGATESASAVTEISATINQMAVQIRQTSEYANEANSLSRKSEHSARGGNELMATLKAAMQEINQSGLDI TNIIRAIEEIATQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAARSAEAAQRSTRLIQESNTRTVKGMELTDDTAQA LEAIVRGAAQVSQLVEEIAQASSQQASGIEQVSQAIGQIDEVVHHNSSNSDQSTQAAQELTQQARQMIEQVGRFKVRSVR
Specific function: May bind attractants or detect changes in the extracellular concentration of soluble sugars [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788194, Length=376, Percent_Identity=33.5106382978723, Blast_Score=163, Evalue=3e-41, Organism=Escherichia coli, GI1787690, Length=305, Percent_Identity=36.0655737704918, Blast_Score=155, Evalue=1e-38, Organism=Escherichia coli, GI2367378, Length=308, Percent_Identity=35.3896103896104, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1788195, Length=263, Percent_Identity=36.8821292775665, Blast_Score=149, Evalue=5e-37, Organism=Escherichia coli, GI1789453, Length=262, Percent_Identity=33.969465648855, Blast_Score=137, Evalue=3e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 78223; Mature: 78092
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLKSIQQRIAVIGGLCLLISAGILIGYSVYLASSTQHLVSTRVSQQAQEDALQNLQHLA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH GQYAEEIRTEFTEALETARSMATTFAVAKSKENGGLQVGRDEVNAVLLNVLKSQPDFNGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHCCCCCCCC YSCWEPDAIDGQDYLFTDGQNGNNAQTGRFTPYWTRSADGKIAVQPLVEYDTQDKHPNGV CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEHHHHCCCCCCCCCCC LKGGWYIGPRETLKESVLGPLPYVVQGRQVWLATLSVPIIADGRFLGVAGTDYDLDFVQR EECCEEECCHHHHHHHHCCCCCHHHCCCEEEEEEECCEEEECCEEEEECCCCCCHHHHHH ISQEVSAKLFEGQGEVAIVSDQGLIVAESRYPNLIGQHFQQVLPDTWRPALDSIQKGERL HHHHHHHHHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCHH ARLDDNGMMIVLAPIHLGRTGKPWSMMLKIDKQIVLAKATELKAEMDAQSQRSMLQQVGA HEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH GVVISLLAVIALWLSARAIALPIRRAAQLAGAIQKGDFSQRLGHRSADEVGQLSASLDRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH ADSLQEQVHVAERISQGDLAVEVRLASERDQLGLALRRMVDNLNELVSQVQLSSGLINDK HHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC AGQVTRLSHELSTGATESASAVTEISATINQMAVQIRQTSEYANEANSLSRKSEHSARGG CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH NELMATLKAAMQEINQSGLDITNIIRAIEEIATQTNLLALNAAIEAARAGEHGRGFAVVA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHH DEVRQLAARSAEAAQRSTRLIQESNTRTVKGMELTDDTAQALEAIVRGAAQVSQLVEEIA HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QASSQQASGIEQVSQAIGQIDEVVHHNSSNSDQSTQAAQELTQQARQMIEQVGRFKVRSV HHCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCC R C >Mature Secondary Structure PLKSIQQRIAVIGGLCLLISAGILIGYSVYLASSTQHLVSTRVSQQAQEDALQNLQHLA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH GQYAEEIRTEFTEALETARSMATTFAVAKSKENGGLQVGRDEVNAVLLNVLKSQPDFNGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHCCCCCCCC YSCWEPDAIDGQDYLFTDGQNGNNAQTGRFTPYWTRSADGKIAVQPLVEYDTQDKHPNGV CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEHHHHCCCCCCCCCCC LKGGWYIGPRETLKESVLGPLPYVVQGRQVWLATLSVPIIADGRFLGVAGTDYDLDFVQR EECCEEECCHHHHHHHHCCCCCHHHCCCEEEEEEECCEEEECCEEEEECCCCCCHHHHHH ISQEVSAKLFEGQGEVAIVSDQGLIVAESRYPNLIGQHFQQVLPDTWRPALDSIQKGERL HHHHHHHHHHCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCHH ARLDDNGMMIVLAPIHLGRTGKPWSMMLKIDKQIVLAKATELKAEMDAQSQRSMLQQVGA HEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH GVVISLLAVIALWLSARAIALPIRRAAQLAGAIQKGDFSQRLGHRSADEVGQLSASLDRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH ADSLQEQVHVAERISQGDLAVEVRLASERDQLGLALRRMVDNLNELVSQVQLSSGLINDK HHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC AGQVTRLSHELSTGATESASAVTEISATINQMAVQIRQTSEYANEANSLSRKSEHSARGG CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH NELMATLKAAMQEINQSGLDITNIIRAIEEIATQTNLLALNAAIEAARAGEHGRGFAVVA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHH DEVRQLAARSAEAAQRSTRLIQESNTRTVKGMELTDDTAQALEAIVRGAAQVSQLVEEIA HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QASSQQASGIEQVSQAIGQIDEVVHHNSSNSDQSTQAAQELTQQARQMIEQVGRFKVRSV HHCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHCCC R C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8436949 [H]