Click here to switch to the map view.

The map label for this gene is potC [C]

Identifier: 145300886

GI number: 145300886

Start: 4332560

End: 4333354

Strand: Direct

Name: potC [C]

Synonym: ASA_4032

Alternate gene names: 145300886

Gene position: 4332560-4333354 (Clockwise)

Preceding gene: 145300885

Following gene: 145300887

Centisome position: 92.14

GC content: 63.52

Gene sequence:

>795_bases
ATGCGAAGGGAAATTCCCATGAGTGAACTCCAACCAAGCTGGCCGCGCTGGGTGCTGAGCATCCTGGTGGCAACTCTGCT
GCTGCCACTGCTGGCGACCCTGCTCTACTCCCTCTCCACCCGCTGGGGGGCGACTCTGCTGCCGGACGGCTTCACGCTGG
AGTGGTATCTGCAACTGTGGGGGGACCCGCGCTTCCTGGCTGCCTTCGGCCGCAGCCTGTTTGTCTGTTTCGCCACCCTG
CTGCTGGGCACGCTGGTGCTGGTCCCGACCGTGCTGGTGGTGGCCTACTACTTCCCCAAGCTGGATCCCTGGATGAACCT
GCTGATCCTGCTCCCCTTTGCAGTGCCGCCCGTGGTCTCCTCGGTGGGGTTGCTGCAGATCTACGCCGACGGCCCGCTGC
CGATTATCGGCACGCCCTGGATCCTGGTGGGCACCTGGTTCACAGTGGTGCTCCCCTTCATGTATCGGGCCATGGCCAAC
AGCTTGCAGGGCGTGCCGCTCAGAGATCTGATGGATGCCGCCCACCTGCTGGGGGCGAGCAGTACACGCGCCTTCGCCCT
GGTGGTGCTGCCAAATCTGCGCAAGGGGCTGCTGGCGGCGCTGTTTCTCTCCCTCTCCTTCCTGCTTGGTGAGTTCGTGT
TTGCCAACATGCTGGTGGGCACCCGTTACGAAACCCTGCAGGTCTATCTCTACAACATGCGCGCCACCTCGGGCCACTTC
ACCAGCGCGCTGGTGATGAGCTACTTCCTGCTGACCCTGCTGCTCACCTGGGCGGCGAACAGATTCCATCGGTGA

Upstream 100 bases:

>100_bases
TTCCTCGAACCCAATCTGGCGGCGGCGCTGGCGGTGATCCTGATGGTGCTGCTGGGCGTGGTGACGGCGGCAAATCAATG
GCTGCTCAAGCGCAGCTACC

Downstream 100 bases:

>100_bases
TCCCATATGTTCCATCTAGAAGTAAGCCAACTGCACAAATCCTACGGCGAGACCAAGGTCTTCGAAGGGATCGAATTCGG
CATCCGCAAGGGGGAGTTGG

Product: ABC-type transporter, permease component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: ABC Transporter Permease; Permease Of ABC Transporter; Polyamine ABC Transporter Permease Protein; ABC Transporter; ABC Transport System Permease Protein; ABC-Type Transport System Permease Protein; Spermidine/Putrescine ABC Transporter Permease Component; Transmembrane Component Of ABC Transporter; ABC Transporter Membrane Protein; ABC Transporter, Permease Component Fragment; ABC Transporter Permease Component; ABC-Type Transporter Permease Component

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MRREIPMSELQPSWPRWVLSILVATLLLPLLATLLYSLSTRWGATLLPDGFTLEWYLQLWGDPRFLAAFGRSLFVCFATL
LLGTLVLVPTVLVVAYYFPKLDPWMNLLILLPFAVPPVVSSVGLLQIYADGPLPIIGTPWILVGTWFTVVLPFMYRAMAN
SLQGVPLRDLMDAAHLLGASSTRAFALVVLPNLRKGLLAALFLSLSFLLGEFVFANMLVGTRYETLQVYLYNMRATSGHF
TSALVMSYFLLTLLLTWAANRFHR

Sequences:

>Translated_264_residues
MRREIPMSELQPSWPRWVLSILVATLLLPLLATLLYSLSTRWGATLLPDGFTLEWYLQLWGDPRFLAAFGRSLFVCFATL
LLGTLVLVPTVLVVAYYFPKLDPWMNLLILLPFAVPPVVSSVGLLQIYADGPLPIIGTPWILVGTWFTVVLPFMYRAMAN
SLQGVPLRDLMDAAHLLGASSTRAFALVVLPNLRKGLLAALFLSLSFLLGEFVFANMLVGTRYETLQVYLYNMRATSGHF
TSALVMSYFLLTLLLTWAANRFHR
>Mature_264_residues
MRREIPMSELQPSWPRWVLSILVATLLLPLLATLLYSLSTRWGATLLPDGFTLEWYLQLWGDPRFLAAFGRSLFVCFATL
LLGTLVLVPTVLVVAYYFPKLDPWMNLLILLPFAVPPVVSSVGLLQIYADGPLPIIGTPWILVGTWFTVVLPFMYRAMAN
SLQGVPLRDLMDAAHLLGASSTRAFALVVLPNLRKGLLAALFLSLSFLLGEFVFANMLVGTRYETLQVYLYNMRATSGHF
TSALVMSYFLLTLLLTWAANRFHR

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. [C]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29616; Mature: 29616

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRREIPMSELQPSWPRWVLSILVATLLLPLLATLLYSLSTRWGATLLPDGFTLEWYLQLW
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH
GDPRFLAAFGRSLFVCFATLLLGTLVLVPTVLVVAYYFPKLDPWMNLLILLPFAVPPVVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SVGLLQIYADGPLPIIGTPWILVGTWFTVVLPFMYRAMANSLQGVPLRDLMDAAHLLGAS
HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
STRAFALVVLPNLRKGLLAALFLSLSFLLGEFVFANMLVGTRYETLQVYLYNMRATSGHF
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEHHHCCCCHH
TSALVMSYFLLTLLLTWAANRFHR
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRREIPMSELQPSWPRWVLSILVATLLLPLLATLLYSLSTRWGATLLPDGFTLEWYLQLW
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHH
GDPRFLAAFGRSLFVCFATLLLGTLVLVPTVLVVAYYFPKLDPWMNLLILLPFAVPPVVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SVGLLQIYADGPLPIIGTPWILVGTWFTVVLPFMYRAMANSLQGVPLRDLMDAAHLLGAS
HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
STRAFALVVLPNLRKGLLAALFLSLSFLLGEFVFANMLVGTRYETLQVYLYNMRATSGHF
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEHHHCCCCHH
TSALVMSYFLLTLLLTWAANRFHR
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA