| Definition | Aeromonas salmonicida subsp. salmonicida A449, complete genome. |
|---|---|
| Accession | NC_009348 |
| Length | 4,702,402 |
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The map label for this gene is uvrA [H]
Identifier: 145300855
GI number: 145300855
Start: 4291736
End: 4294564
Strand: Direct
Name: uvrA [H]
Synonym: ASA_3999
Alternate gene names: 145300855
Gene position: 4291736-4294564 (Clockwise)
Preceding gene: 145300854
Following gene: 145300856
Centisome position: 91.27
GC content: 60.52
Gene sequence:
>2829_bases ATGGAAAAGATAGTGGTCCGGGGTGCTCGCACCCATAACCTCAAGAACATCAATCTGACCCTGCCCCGCGACAAGCTGAT CGTGGTTACCGGCCTCTCCGGTTCAGGCAAGTCTTCCCTGGCGTTCGATACCCTTTATGCCGAAGGGCAGCGTCGCTATG TGGAGTCGTTATCTGCCTATGCCCGCCAGTTTCTCTCCCTGATGGAGAAACCGGATGTGGATCATATAGAGGGGCTCTCC CCTGCCATCTCCATCGAGCAGAAGTCCACCTCTCACAACCCGCGCTCGACCGTTGGCACCATCACCGAAATTTATGACTA CCTGCGTCTGCTTTTTGCGCGGGTAGGTGAGCCCCGCTGCCCGACTCATGCCATCCCGCTCGCCGCCCAGACCATCAGCC AGATGGTGGATCAGGTGCTGGCCCAGCCGGAGGGCAGCAAACTGATGCTGCTGGCCCCGGTGGTACGGGATCGCAAGGGT GAGCACACCAAGTTGCTGGAGAATCTGGCGGCCCAGGGCTATATCCGGGCCCGTATCGATGGCGAGGTGTGCGATCTCTC GGATCCACCCACCCTGGAACTGCACAAGAAGCACACCATAGAAGTGGTGGTGGACCGCTTCAAGGTACGCGATGACCTTG CGTTGCGGCTGGCCGAATCGTTCGAGACGGCATTGACCCTTTCGGGCGGTATCGTGCAGGTGGTGCCCATGGATGGGGAG GAGGGGGTTGGGCCCATGACCTTCTCTGCCAACTTCGCCTGCCCCGAGTGTGGCTACTCCATGTCGGAGCTGGAGCCGCG CATCTTCTCCTTCAACAATCCGGCCGGTGCCTGCCCCACCTGTGATGGGCTCGGGGTACAGCAATACTTCGATCCGGCCA AGGTGATCCATGACCCTTCCATCAGTCTGGCCAACGGCGCCATTCGTGGCTGGGACAGGCGCAGTTTCTATTACTTCCAG ATGCTCAAATCCCTCTCCGATCACTACAAGTTCGATCTGGAGGCCGCGTGGGAAGATCTGCCCCTCAAAACCCAGGAGGT GATCCTGCGTGGCTCGGGCCGTACCGAGGTCGAGTTCCGTTACATGAACGATCGCGGTGACGTTGTGGTGCGCAAGCATC CGTTCGAGGGGATCCTGCACAACATGGAGCGCCGCTACCGTGAAACCGAGTCCAACTCGGTACGGGAAGAGCTCTCCAAG TACATCGCCAACAAATCCTGTACCAGTTGCGGCGGCAGTCGACTGCGGGAAGAGGCGCGCCACGTATTCGTGGACAACCG CAATCTGTCCGCCATTGCCGAACAGTCCATCGGTGATGCGCTGGCCTTCTTCGAGGGACTGAGCCTGACTGGCCAGCGCG CCCAGATCGCCGAGAAGATCCTGAAAGAGATCGTCGAACGGCTGGGTTTTCTGGTGAATGTCGGCCTCAACTATTTGAGT CTCTCACGCAGTGCAGAAACCCTCTCCGGCGGGGAAGCCCAGCGCATCCGGCTGGCGAGCCAGATCGGTGCCGGCCTGGT TGGGGTCATGTATGTGCTGGATGAACCTTCCATCGGCCTGCACCAGCGTGATAACGAGCGGCTGCTCACGACCCTCATCC ATCTGCGCGATCTGGGCAACACCGTCATCGTGGTGGAGCACGACGAGGATGCCATTCGCTTGGCTGACCACGTGCTCGAC ATAGGCCCCGGGGCCGGGGTGCACGGCGGTAATATCGTGGCCCAGGGGACACCCCAGCAGATCATCGACAACCCGGATTC GCTGACCGGTGACTATCTCTCTGGCCGCAAGCGGATTGCCATTCCTGCCGAGCGTACGGCGCTCACTGGCAAGTGGTTGA AACTCAAAGGCGCGAGCGGCAACAACCTGTGCAACGTCAATCTGGATCTGCCTCTCGGGGTGATGACCTGCGTCACCGGT GTTTCCGGCTCCGGCAAGTCGACCCTGATCAACGACACCCTGTTCCGCATTGCCCACCGCGAGCTCAACAAGGCGACCGA GTCGACCCCGGCGCCCTATCGCAGTGTCGAGGGACTGGAGCACCTGGACAAGGTGGTGGATATCGACCAGAGCCCCATCG GTCGTACCCCGCGCTCCAACCCGGCCACCTATACCGGCCTGTTCACCCCGATCCGCGAGCTGCTTTCCGGCACGCAGGAG GCGCGCTCCCGTGGCTATCTGCCGGGTCGCTTCTCCTTCAACGTCAAGGGCGGTCGCTGCGAAGCCTGTCAGGGGGATGG GGTCATCAAGGTGGAAATGCACTTCCTGCCGGACGTTTACGTGCCATGCGATGTCTGCAAGGGCAAGCGTTACAATCGCG AGACCCTGGAGGTGAAGTACAAGGGCAAGAACATCCACGAAATACTGGACATGACGGTGGAGGACGCGCGTGCCTTCTTC GATCCGGTACCGGCAGTGGCGCGCAAACTGCAAACCTTGATGGATGTGGGTCTCTCTTACATTCGCCTTGGTCAGTCAGC GACGACGCTCTCCGGCGGCGAGGCGCAGCGGGTCAAGCTGGCGCGCGAGCTCTCCAAGCGTGACACCGGCCAGACCCTCT ATATCCTGGATGAACCGACTACAGGGCTGCACTTCCACGATATCCAGCAGCTGCTCAAGGTATTGCATCAACTGCGGGAT CGCGGCAATACCATCGTTATCATCGAGCACAATCTGGACGTCATCAAAACCGCCGACTGGATCGTCGATCTGGGACCCGA GGGGGGCGCTGGCGGCGGTCGCATTCTGGTGACGGGCACGCCGGAGCAGATCAGCCGTTGTGAGGATTCTCATACGGCGC GCTTTTTGGCGCCGCTGTTGGTAAAATAA
Upstream 100 bases:
>100_bases TCTGAAATCGATGGAGATGATGGATAAAACCTGTCTATTCATCCAGTAGTCTCTATGCCATACTGATTCGCTCTGATTTG TGTATCGAGCGTGCAACAAG
Downstream 100 bases:
>100_bases TCACAGCAGTCATGAAACAAGGGGCCCTGGGCCCCTTGTTTTTTATGGAAGTGATTCAGTTGCCGCCCCAGGAGGTGGAT ACTCCATACTTGGTACAAGA
Product: excinuclease ABC, subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 942; Mature: 942
Protein sequence:
>942_residues MEKIVVRGARTHNLKNINLTLPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHAIPLAAQTISQMVDQVLAQPEGSKLMLLAPVVRDRKG EHTKLLENLAAQGYIRARIDGEVCDLSDPPTLELHKKHTIEVVVDRFKVRDDLALRLAESFETALTLSGGIVQVVPMDGE EGVGPMTFSANFACPECGYSMSELEPRIFSFNNPAGACPTCDGLGVQQYFDPAKVIHDPSISLANGAIRGWDRRSFYYFQ MLKSLSDHYKFDLEAAWEDLPLKTQEVILRGSGRTEVEFRYMNDRGDVVVRKHPFEGILHNMERRYRETESNSVREELSK YIANKSCTSCGGSRLREEARHVFVDNRNLSAIAEQSIGDALAFFEGLSLTGQRAQIAEKILKEIVERLGFLVNVGLNYLS LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLTTLIHLRDLGNTVIVVEHDEDAIRLADHVLD IGPGAGVHGGNIVAQGTPQQIIDNPDSLTGDYLSGRKRIAIPAERTALTGKWLKLKGASGNNLCNVNLDLPLGVMTCVTG VSGSGKSTLINDTLFRIAHRELNKATESTPAPYRSVEGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELLSGTQE ARSRGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIHEILDMTVEDARAFF DPVPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGQTLYILDEPTTGLHFHDIQQLLKVLHQLRD RGNTIVIIEHNLDVIKTADWIVDLGPEGGAGGGRILVTGTPEQISRCEDSHTARFLAPLLVK
Sequences:
>Translated_942_residues MEKIVVRGARTHNLKNINLTLPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHAIPLAAQTISQMVDQVLAQPEGSKLMLLAPVVRDRKG EHTKLLENLAAQGYIRARIDGEVCDLSDPPTLELHKKHTIEVVVDRFKVRDDLALRLAESFETALTLSGGIVQVVPMDGE EGVGPMTFSANFACPECGYSMSELEPRIFSFNNPAGACPTCDGLGVQQYFDPAKVIHDPSISLANGAIRGWDRRSFYYFQ MLKSLSDHYKFDLEAAWEDLPLKTQEVILRGSGRTEVEFRYMNDRGDVVVRKHPFEGILHNMERRYRETESNSVREELSK YIANKSCTSCGGSRLREEARHVFVDNRNLSAIAEQSIGDALAFFEGLSLTGQRAQIAEKILKEIVERLGFLVNVGLNYLS LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLTTLIHLRDLGNTVIVVEHDEDAIRLADHVLD IGPGAGVHGGNIVAQGTPQQIIDNPDSLTGDYLSGRKRIAIPAERTALTGKWLKLKGASGNNLCNVNLDLPLGVMTCVTG VSGSGKSTLINDTLFRIAHRELNKATESTPAPYRSVEGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELLSGTQE ARSRGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIHEILDMTVEDARAFF DPVPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGQTLYILDEPTTGLHFHDIQQLLKVLHQLRD RGNTIVIIEHNLDVIKTADWIVDLGPEGGAGGGRILVTGTPEQISRCEDSHTARFLAPLLVK >Mature_942_residues MEKIVVRGARTHNLKNINLTLPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHAIPLAAQTISQMVDQVLAQPEGSKLMLLAPVVRDRKG EHTKLLENLAAQGYIRARIDGEVCDLSDPPTLELHKKHTIEVVVDRFKVRDDLALRLAESFETALTLSGGIVQVVPMDGE EGVGPMTFSANFACPECGYSMSELEPRIFSFNNPAGACPTCDGLGVQQYFDPAKVIHDPSISLANGAIRGWDRRSFYYFQ MLKSLSDHYKFDLEAAWEDLPLKTQEVILRGSGRTEVEFRYMNDRGDVVVRKHPFEGILHNMERRYRETESNSVREELSK YIANKSCTSCGGSRLREEARHVFVDNRNLSAIAEQSIGDALAFFEGLSLTGQRAQIAEKILKEIVERLGFLVNVGLNYLS LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLTTLIHLRDLGNTVIVVEHDEDAIRLADHVLD IGPGAGVHGGNIVAQGTPQQIIDNPDSLTGDYLSGRKRIAIPAERTALTGKWLKLKGASGNNLCNVNLDLPLGVMTCVTG VSGSGKSTLINDTLFRIAHRELNKATESTPAPYRSVEGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELLSGTQE ARSRGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIHEILDMTVEDARAFF DPVPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGQTLYILDEPTTGLHFHDIQQLLKVLHQLRD RGNTIVIIEHNLDVIKTADWIVDLGPEGGAGGGRILVTGTPEQISRCEDSHTARFLAPLLVK
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=941, Percent_Identity=79.596174282678, Blast_Score=1550, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103932; Mature: 103932
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKIVVRGARTHNLKNINLTLPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHAIPLAAQTISQMVDQVLAQPEGSKLMLLAPVVRDRKGEHTKLLENLAAQGYIRARID CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHCCEEEEEEC GEVCDLSDPPTLELHKKHTIEVVVDRFKVRDDLALRLAESFETALTLSGGIVQVVPMDGE CCEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCC EGVGPMTFSANFACPECGYSMSELEPRIFSFNNPAGACPTCDGLGVQQYFDPAKVIHDPS CCCCCEEEECCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHCCCC ISLANGAIRGWDRRSFYYFQMLKSLSDHYKFDLEAAWEDLPLKTQEVILRGSGRTEVEFR CEECCCCCCCCCCCHHHHHHHHHHHHHHCEEEHHHHHCCCCCCHHHEEEECCCCCEEEEE YMNDRGDVVVRKHPFEGILHNMERRYRETESNSVREELSKYIANKSCTSCGGSRLREEAR EECCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH HVFVDNRNLSAIAEQSIGDALAFFEGLSLTGQRAQIAEKILKEIVERLGFLVNVGLNYLS EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLTTLIHLRDLGN HCCCCHHCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC TVIVVEHDEDAIRLADHVLDIGPGAGVHGGNIVAQGTPQQIIDNPDSLTGDYLSGRKRIA EEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCHHHCCCCEEE IPAERTALTGKWLKLKGASGNNLCNVNLDLPLGVMTCVTGVSGSGKSTLINDTLFRIAHR CCCCCCEECCCEEEEECCCCCCEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH ELNKATESTPAPYRSVEGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELLSGTQE HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCHHH ARSRGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKY HHHCCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE KGKNIHEILDMTVEDARAFFDPVPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHH ARELSKRDTGQTLYILDEPTTGLHFHDIQQLLKVLHQLRDRGNTIVIIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IVDLGPEGGAGGGRILVTGTPEQISRCEDSHTARFLAPLLVK EEEECCCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure MEKIVVRGARTHNLKNINLTLPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHAIPLAAQTISQMVDQVLAQPEGSKLMLLAPVVRDRKGEHTKLLENLAAQGYIRARID CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHCCEEEEEEC GEVCDLSDPPTLELHKKHTIEVVVDRFKVRDDLALRLAESFETALTLSGGIVQVVPMDGE CCEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCC EGVGPMTFSANFACPECGYSMSELEPRIFSFNNPAGACPTCDGLGVQQYFDPAKVIHDPS CCCCCEEEECCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHCCCC ISLANGAIRGWDRRSFYYFQMLKSLSDHYKFDLEAAWEDLPLKTQEVILRGSGRTEVEFR CEECCCCCCCCCCCHHHHHHHHHHHHHHCEEEHHHHHCCCCCCHHHEEEECCCCCEEEEE YMNDRGDVVVRKHPFEGILHNMERRYRETESNSVREELSKYIANKSCTSCGGSRLREEAR EECCCCCEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH HVFVDNRNLSAIAEQSIGDALAFFEGLSLTGQRAQIAEKILKEIVERLGFLVNVGLNYLS EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLTTLIHLRDLGN HCCCCHHCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC TVIVVEHDEDAIRLADHVLDIGPGAGVHGGNIVAQGTPQQIIDNPDSLTGDYLSGRKRIA EEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHCCCCCCCCHHHCCCCEEE IPAERTALTGKWLKLKGASGNNLCNVNLDLPLGVMTCVTGVSGSGKSTLINDTLFRIAHR CCCCCCEECCCEEEEECCCCCCEEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH ELNKATESTPAPYRSVEGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELLSGTQE HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCHHH ARSRGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKY HHHCCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE KGKNIHEILDMTVEDARAFFDPVPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHH ARELSKRDTGQTLYILDEPTTGLHFHDIQQLLKVLHQLRDRGNTIVIIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IVDLGPEGGAGGGRILVTGTPEQISRCEDSHTARFLAPLLVK EEEECCCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]