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The map label for this gene is sodA [H]

Identifier: 145300589

GI number: 145300589

Start: 4010480

End: 4011094

Strand: Direct

Name: sodA [H]

Synonym: ASA_3721

Alternate gene names: 145300589

Gene position: 4010480-4011094 (Clockwise)

Preceding gene: 145300588

Following gene: 145300593

Centisome position: 85.29

GC content: 62.11

Gene sequence:

>615_bases
ATGAGCCATACCCTGCCAGACCTTTCTTACGCCTACGATGCGCTGGAACCCCACATAGACGCGCTGACCATGGAGATCCA
CCACAGTCGTCACCACCAGACCTACATCACCAACCTCAACGTCGCACTGGAAGCGTTCCCCGAGCTGGCCGCCCTGCCGG
TGGATGAGCTGCTTGCCCGCTTCGACAGCCTGCCGGTCAAAGTGCAGGGGGCGGTGCGCAATCATGGGGGGGGCCATGCC
AACCACAGCCTGTTCTGGCAGGTGATGAGCCCGCAAGGCGGCAGTGAGCCGACTGGCGAGCTGGCGGAGGCGATCCGGCG
GGATCTGGGAGGGTTGGATGCTTTCAAGCAGGCTTTCACCCAGGCGGCGTTGAGCCGCTTCGGCAGCGGCTGGGCCTGGC
TGGTGGTCGACAAGGAGGGCAAATTACAGGTGGAGAGCAGCGCCAATCAGGACAGTCCCCTGATGCAGGGCCATGCGCCC
ATATTGGGGCTGGACGTGTGGGAGCACGCCTATTACCTCAAGTACCAGAACAAGCGTCCCGACTATATAGCTGCGTTTTA
CAACGTGATCGACTGGGACGAAGTGGAACGTCGTTACCGGCAGGCGCTGGCCTGA

Upstream 100 bases:

>100_bases
GCACGGCACTCAGGATGCCATTCAGCGTTGCCTCTGTCAGTGCCTGTGCCACGCCGAGCCCGCCCATCAACTACATTAAT
CACAATAAAAAGAGGTGATC

Downstream 100 bases:

>100_bases
TCTGCTAGCGTCTTGTTCCATTCACAAAAAGAGACCCGCTATCCGGCGGGTCTCTTTTTGTCTGGTCAGGGCGTTGGATT
GGCGCCTGCTGCACTGGTTG

Product: iron/manganese superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSHTLPDLSYAYDALEPHIDALTMEIHHSRHHQTYITNLNVALEAFPELAALPVDELLARFDSLPVKVQGAVRNHGGGHA
NHSLFWQVMSPQGGSEPTGELAEAIRRDLGGLDAFKQAFTQAALSRFGSGWAWLVVDKEGKLQVESSANQDSPLMQGHAP
ILGLDVWEHAYYLKYQNKRPDYIAAFYNVIDWDEVERRYRQALA

Sequences:

>Translated_204_residues
MSHTLPDLSYAYDALEPHIDALTMEIHHSRHHQTYITNLNVALEAFPELAALPVDELLARFDSLPVKVQGAVRNHGGGHA
NHSLFWQVMSPQGGSEPTGELAEAIRRDLGGLDAFKQAFTQAALSRFGSGWAWLVVDKEGKLQVESSANQDSPLMQGHAP
ILGLDVWEHAYYLKYQNKRPDYIAAFYNVIDWDEVERRYRQALA
>Mature_203_residues
SHTLPDLSYAYDALEPHIDALTMEIHHSRHHQTYITNLNVALEAFPELAALPVDELLARFDSLPVKVQGAVRNHGGGHAN
HSLFWQVMSPQGGSEPTGELAEAIRRDLGGLDAFKQAFTQAALSRFGSGWAWLVVDKEGKLQVESSANQDSPLMQGHAPI
LGLDVWEHAYYLKYQNKRPDYIAAFYNVIDWDEVERRYRQALA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=51.7412935323383, Blast_Score=209, Evalue=1e-54,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=51.7412935323383, Blast_Score=209, Evalue=1e-54,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=42.2885572139304, Blast_Score=155, Evalue=3e-38,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=59.7087378640777, Blast_Score=253, Evalue=6e-69,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=41.9191919191919, Blast_Score=176, Evalue=7e-46,
Organism=Caenorhabditis elegans, GI17506561, Length=204, Percent_Identity=43.1372549019608, Blast_Score=166, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=40.8866995073892, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=41.1764705882353, Blast_Score=165, Evalue=4e-42,
Organism=Drosophila melanogaster, GI17136812, Length=205, Percent_Identity=42.4390243902439, Blast_Score=169, Evalue=8e-43,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22907; Mature: 22776

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHTLPDLSYAYDALEPHIDALTMEIHHSRHHQTYITNLNVALEAFPELAALPVDELLAR
CCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHH
FDSLPVKVQGAVRNHGGGHANHSLFWQVMSPQGGSEPTGELAEAIRRDLGGLDAFKQAFT
HCCCCEEEEECHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
QAALSRFGSGWAWLVVDKEGKLQVESSANQDSPLMQGHAPILGLDVWEHAYYLKYQNKRP
HHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEHHHHHHEEEEEECCCCC
DYIAAFYNVIDWDEVERRYRQALA
CHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SHTLPDLSYAYDALEPHIDALTMEIHHSRHHQTYITNLNVALEAFPELAALPVDELLAR
CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCHHHHHHH
FDSLPVKVQGAVRNHGGGHANHSLFWQVMSPQGGSEPTGELAEAIRRDLGGLDAFKQAFT
HCCCCEEEEECHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
QAALSRFGSGWAWLVVDKEGKLQVESSANQDSPLMQGHAPILGLDVWEHAYYLKYQNKRP
HHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEHHHHHHEEEEEECCCCC
DYIAAFYNVIDWDEVERRYRQALA
CHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8810073 [H]