Click here to switch to the map view.

The map label for this gene is yfbU [C]

Identifier: 145300281

GI number: 145300281

Start: 3678854

End: 3679354

Strand: Direct

Name: yfbU [C]

Synonym: ASA_3399

Alternate gene names: 145300281

Gene position: 3678854-3679354 (Clockwise)

Preceding gene: 145300280

Following gene: 145300283

Centisome position: 78.23

GC content: 59.08

Gene sequence:

>501_bases
ATGAACATGAGCCACACCGAACGCCTGATCCTGAGCAACCAGTACGAGATCCTGGCCAAACTCAATCCGGAGAAAGCGGC
GTCTTACCAGCGGGCCAGCACCATCATAGCGCGCGGCTACTGCCTGCAGATCCTCGAACTGGAGAAGAGCTTCGGTCATC
TGGATCTGGCCACCTGTCAGGAGGTGATAGACACCCTGGAACTGCACCATGCGCTGGCCATCTCCTGGGGCAATCTTGAT
GGGGCCGATCAGAGTGAAATCACCGCCAGCCGGCTGGAATTCAACGGCTACAGCCGCAGCAAGGAGCGGGAGCTGGCCGA
CTACGTCTGCTTCCTGCTGGAAGTGGACAAGCGCTTCCCCGAGCTCAAGTGCCCATGTGACGAGCTTTCGAGCGACATTG
CCATGCGCGACAAGTACCAGCGCATGCTGACCGTATGGCGCCAGTGCCCCCGTCAATACAAGCTCTCCATCCAGGAGATC
CGCAAAGTATTGGCGGCCTGA

Upstream 100 bases:

>100_bases
CCGATCCGGCTTTCTCACCAACCTCCCCTGCCAGATCAAAAAATTCATCTGAGATATGGGTTAACGTGACCCCAGTTTCA
TTTTCCAGTGAGAAAAGCCC

Downstream 100 bases:

>100_bases
TCGACATAGATGGAAAAGGCGCCTCTGGGCGCCTTTGTCTGATTGGAAAACCTTGTTCGCCTATTCGTAGAGAAAAGATT
TGTCCAGCTGCTTGAAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQEVIDTLELHHALAISWGNLD
GADQSEITASRLEFNGYSRSKERELADYVCFLLEVDKRFPELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEI
RKVLAA

Sequences:

>Translated_166_residues
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQEVIDTLELHHALAISWGNLD
GADQSEITASRLEFNGYSRSKERELADYVCFLLEVDKRFPELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEI
RKVLAA
>Mature_166_residues
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQEVIDTLELHHALAISWGNLD
GADQSEITASRLEFNGYSRSKERELADYVCFLLEVDKRFPELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEI
RKVLAA

Specific function: Unknown

COG id: COG3013

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0304 family [H]

Homologues:

Organism=Escherichia coli, GI87082081, Length=166, Percent_Identity=42.7710843373494, Blast_Score=150, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005587
- InterPro:   IPR023146
- InterPro:   IPR023145
- ProDom:   PD035118 [H]

Pfam domain/function: PF03887 YfbU [H]

EC number: NA

Molecular weight: Translated: 19175; Mature: 19175

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQ
CCCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EVIDTLELHHALAISWGNLDGADQSEITASRLEFNGYSRSKERELADYVCFLLEVDKRFP
HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
ELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEIRKVLAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MNMSHTERLILSNQYEILAKLNPEKAASYQRASTIIARGYCLQILELEKSFGHLDLATCQ
CCCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EVIDTLELHHALAISWGNLDGADQSEITASRLEFNGYSRSKERELADYVCFLLEVDKRFP
HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
ELKCPCDELSSDIAMRDKYQRMLTVWRQCPRQYKLSIQEIRKVLAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA