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The map label for this gene is arnB [H]

Identifier: 145300196

GI number: 145300196

Start: 3574878

End: 3576014

Strand: Direct

Name: arnB [H]

Synonym: ASA_3307

Alternate gene names: 145300196

Gene position: 3574878-3576014 (Clockwise)

Preceding gene: 145300194

Following gene: 145300197

Centisome position: 76.02

GC content: 60.86

Gene sequence:

>1137_bases
ATGCAAGACTTTCTGCCATTTTCGAAGCCAGCCATCGGCGACGCCGAAATAAGCGCTGTCTGTGAGGTGCTGAAATCGGG
ATGGATCACCACGGGCCCGAAGAGTCACGAACTGGAACAGCAATTCTGTGACACATACGGCTGCCAGCATGCCGTTGCGC
TCAACTCTGCCACCGCTGGCATGCACGTCACCCTGATGGCACTGGGCATAGGCCCGGGGGATGAGGTGATTACCCCGTCA
CAGACCTGGGTGTCCACCATCAACCTCATCACACTGCTCGGAGCCGAACCCGTTTTTGTCGACGTGGACAGAGACACACT
GATGACCAGCGCAGAGCTTATCGCGCCGCTCATCACAGTCAACACCAAGGCCATCATTCCGGTTCACTACGCCGGCGCCC
CCGTCGATCTGGACCCTATTCTCAAGCTGGCCAGACAATACGACATCCCCGTCATCGAAGACGCCGCCCATGCCATTGGC
ACCCGCTATCGGGATCGCTGGATTGGCGCCACCGGCACCGCCATCTTCTCCTTCCATGCCATCAAGAACCTGACCTGCGC
CGAAGGGGGCATGCTGGTGACCGATGACAAGGCGCTGGCGGACAAGGTACGCATGCTCAAGTTTCATGGTCTCGGGGTGG
ATGCCTTCGATCGCATGACGCTGGGCAGCAAACCGCAGGCGGAGGTAATAACGCCCGGCTTCAAGTACAACCTGACCGAC
ATCAACGCCGCCATCGCCCTGATCCAGCTGGCACGCCTGCCCGAGCTCAATGCCAGACGCGCCGGGCTGGTCGCCCGTTA
TCAGGAAAAACTGGCAGGGCTGCCGCTGGCGCCACTCGCCATCCCAACCTATCCCCATCTGCACGCCTGGCACCTCTTCA
TGGTGCGGGTCGATCCCGAGCGCTGCGGTCTCGACAGGGATCAACTGATGCAGGCGCTGCAAGAGCGCGGCATCGGCACC
GGCCTGCACTTTCGCGCCGCCCATACCCAGAAATATTACCGCGAGCGCTACCCCGCCCTCAGTCTGCCTCATACCGAGTG
GAACTCATCACGCCTGTGCACACTGCCACTCTTCCCGGACATGACGCTGGCCGACGTTGACCGTGTGGTCGCGGCACTCA
CCGACATATTGGAGTAA

Upstream 100 bases:

>100_bases
GAGCCATTGCGGGGCCATTTTTATATACGCTATGTTGAAATTAATGTTTAAGGCCGCCTGTTCTGATGGGCACTGATTAA
TATTCATTGTTGGATCTCTT

Downstream 100 bases:

>100_bases
CGACACGTGAACAACACAGATATCAAGCTGGTTTCGGTGATCATCCCCGTTTACAACGAGGAGGCCAGTCTGCCCGTGCT
GCTGAGCCGGGTCACCGCCG

Product: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MQDFLPFSKPAIGDAEISAVCEVLKSGWITTGPKSHELEQQFCDTYGCQHAVALNSATAGMHVTLMALGIGPGDEVITPS
QTWVSTINLITLLGAEPVFVDVDRDTLMTSAELIAPLITVNTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIG
TRYRDRWIGATGTAIFSFHAIKNLTCAEGGMLVTDDKALADKVRMLKFHGLGVDAFDRMTLGSKPQAEVITPGFKYNLTD
INAAIALIQLARLPELNARRAGLVARYQEKLAGLPLAPLAIPTYPHLHAWHLFMVRVDPERCGLDRDQLMQALQERGIGT
GLHFRAAHTQKYYRERYPALSLPHTEWNSSRLCTLPLFPDMTLADVDRVVAALTDILE

Sequences:

>Translated_378_residues
MQDFLPFSKPAIGDAEISAVCEVLKSGWITTGPKSHELEQQFCDTYGCQHAVALNSATAGMHVTLMALGIGPGDEVITPS
QTWVSTINLITLLGAEPVFVDVDRDTLMTSAELIAPLITVNTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIG
TRYRDRWIGATGTAIFSFHAIKNLTCAEGGMLVTDDKALADKVRMLKFHGLGVDAFDRMTLGSKPQAEVITPGFKYNLTD
INAAIALIQLARLPELNARRAGLVARYQEKLAGLPLAPLAIPTYPHLHAWHLFMVRVDPERCGLDRDQLMQALQERGIGT
GLHFRAAHTQKYYRERYPALSLPHTEWNSSRLCTLPLFPDMTLADVDRVVAALTDILE
>Mature_378_residues
MQDFLPFSKPAIGDAEISAVCEVLKSGWITTGPKSHELEQQFCDTYGCQHAVALNSATAGMHVTLMALGIGPGDEVITPS
QTWVSTINLITLLGAEPVFVDVDRDTLMTSAELIAPLITVNTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIG
TRYRDRWIGATGTAIFSFHAIKNLTCAEGGMLVTDDKALADKVRMLKFHGLGVDAFDRMTLGSKPQAEVITPGFKYNLTD
INAAIALIQLARLPELNARRAGLVARYQEKLAGLPLAPLAIPTYPHLHAWHLFMVRVDPERCGLDRDQLMQALQERGIGT
GLHFRAAHTQKYYRERYPALSLPHTEWNSSRLCTLPLFPDMTLADVDRVVAALTDILE

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=376, Percent_Identity=68.8829787234042, Blast_Score=542, Evalue=1e-155,
Organism=Escherichia coli, GI2367285, Length=391, Percent_Identity=30.9462915601023, Blast_Score=166, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 41453; Mature: 41453

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFLPFSKPAIGDAEISAVCEVLKSGWITTGPKSHELEQQFCDTYGCQHAVALNSATAG
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
MHVTLMALGIGPGDEVITPSQTWVSTINLITLLGAEPVFVDVDRDTLMTSAELIAPLITV
EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHEE
NTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIGTRYRDRWIGATGTAIFSFHA
CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IKNLTCAEGGMLVTDDKALADKVRMLKFHGLGVDAFDRMTLGSKPQAEVITPGFKYNLTD
HCCCEECCCCEEEECCHHHHHHHHHHHEECCCCCHHHHCCCCCCCCCCEECCCCEEECHH
INAAIALIQLARLPELNARRAGLVARYQEKLAGLPLAPLAIPTYPHLHAWHLFMVRVDPE
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECHH
RCGLDRDQLMQALQERGIGTGLHFRAAHTQKYYRERYPALSLPHTEWNSSRLCTLPLFPD
HHCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCC
MTLADVDRVVAALTDILE
CHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MQDFLPFSKPAIGDAEISAVCEVLKSGWITTGPKSHELEQQFCDTYGCQHAVALNSATAG
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
MHVTLMALGIGPGDEVITPSQTWVSTINLITLLGAEPVFVDVDRDTLMTSAELIAPLITV
EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHEE
NTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIGTRYRDRWIGATGTAIFSFHA
CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IKNLTCAEGGMLVTDDKALADKVRMLKFHGLGVDAFDRMTLGSKPQAEVITPGFKYNLTD
HCCCEECCCCEEEECCHHHHHHHHHHHEECCCCCHHHHCCCCCCCCCCEECCCCEEECHH
INAAIALIQLARLPELNARRAGLVARYQEKLAGLPLAPLAIPTYPHLHAWHLFMVRVDPE
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECHH
RCGLDRDQLMQALQERGIGTGLHFRAAHTQKYYRERYPALSLPHTEWNSSRLCTLPLFPD
HHCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCC
MTLADVDRVVAALTDILE
CHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA