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The map label for this gene is ydcR [H]

Identifier: 145299648

GI number: 145299648

Start: 2920030

End: 2921472

Strand: Direct

Name: ydcR [H]

Synonym: ASA_2722

Alternate gene names: 145299648

Gene position: 2920030-2921472 (Clockwise)

Preceding gene: 145299644

Following gene: 145299650

Centisome position: 62.1

GC content: 64.8

Gene sequence:

>1443_bases
ATGTCCCTCTACGGCCAGCTGGCAGATCAGTTGCAACAACAGATAGCGAGCGGCGTCTGGCAAGCGGGGGAGCGCATTCC
CTCCATCCGCCAGAGCTGCAAGATCCACCATCTGAGCCCCATGACGGTGCTGCAGGCCTATCAGCTGCTGGAAAGCCGCG
GTCTCATACTGGCGCGGCCCCAGTCCGGCTACTACGTCAAGGCCGCCCCCTCCCCGCTGCGAGCCAGCGCACAGCAGCAA
GCGCACTACACAGGCTCGGTGGACATCAACGATCTGGTGTTCGAGGTGCTGCAGGCGAGCAAGTCGCGAGAACTGGTGCC
CCTTGGCATGTCGGTGGCCGACCAGACCCTGTTCCCCCATCCCCAGCTCGGGCGCGCACTGGCGAGCTGCATGCGCAAAC
TCGATCCCTTCAGCACGGTAGCTGATTTGCCTCCCGGCAACGAGGCGCTGCGCCGCGCCATCGCCCAGCGCTACGCCAGT
GATGGCCTGGCGGTGAGCCCGCAGGAGATCATCATCACAACCGGGGCCATGGAGGCACTCTCCTTGAGCTTGCAGGTACT
GACAGAGCCGGGGGACTGGGTGGTGGTGGAATCCCCCACTTTCTATGGCGCCCTGCAGGCCATAGAGAGGCTGAAACTCA
ATGCGGTGGAGATCCCGGTGATCCCGGGGGTAGGCATCGATCTCGCCCTGCTGGCCGAGGCGCTGGCCCAGCGCCCCATC
AAGGCGTGCTGGCTGATGGGCAATGTGCAGCACCCCTTGGGCCACACAATGCCAGACGGCCACAAGCAGGCGCTGATGCA
GTTGCTGAGCCAGCATGAGGTGCCACTGGTGGAGGACGACGTCTACGCCGATCTCTACTTTGGCCGTGAACGGCCCAAGC
CGCTCAAATGCTGGGATGTGCGGGGCGACAGCCTGCTGTGCAGCTCGTTTTCCAAATGCCTGGCCCCTGGCTTTCGGGTC
GGCTGGGTGGTGGCAGGGCCCCATGCCGAGCGCATTCAGCGGCTGCAACTGATGTCGACCCTGTCGACCAATGTGCCAAG
CCAGCTGGCACTGGCCGAGATGTTGCGCCAGGGCGGGGTAGATGCCCATTTTCGCCGTCTGCGCCACACCCTGGCCCAGC
GCCAGCAACAGATGCGGGCCGCCCTGCTGCGCCTCTTTCCGGATGAAGTGCGCATCAGCGCCCCCGATGGCGGCTACTTC
CTCTGGCTGGAGTTTGACCCCCGTCTCGACAGCCGGGCACTGCATGCCCGGGCGCTCACCTGCGGCTTCTCGCTGGCGCC
CGGTGCGCTCTTCTCCAGTCAGGGGCAGTACAACCACTGCCTGCGCCTCAACAGCTCCCATCCCTGGAGTGAGCAGTTGG
AGAGCGCCCTCGCCCAGCTGGCTGAACTTATTCACCAGCAGCTCGCTCCCCATCTGGATGCCGGAAACAACAACGCCCCA
TGA

Upstream 100 bases:

>100_bases
TTTAACAGACAGGTTCTCGTCCGTTAAGTACACCATGGGTCATGACACCTATAACAGATGCAGTTATAGTGAATTACACC
TATAACAGTTTGAGTGCCCC

Downstream 100 bases:

>100_bases
CAGGGGCGTTATCGGCTATCGATGGTATTGATCCCTGTCAGGCGGGAGCGCTCAGCTGGGCTACCTGCCGCTCTATGCTG
CTCTTGAGGTTGTCATCGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MSLYGQLADQLQQQIASGVWQAGERIPSIRQSCKIHHLSPMTVLQAYQLLESRGLILARPQSGYYVKAAPSPLRASAQQQ
AHYTGSVDINDLVFEVLQASKSRELVPLGMSVADQTLFPHPQLGRALASCMRKLDPFSTVADLPPGNEALRRAIAQRYAS
DGLAVSPQEIIITTGAMEALSLSLQVLTEPGDWVVVESPTFYGALQAIERLKLNAVEIPVIPGVGIDLALLAEALAQRPI
KACWLMGNVQHPLGHTMPDGHKQALMQLLSQHEVPLVEDDVYADLYFGRERPKPLKCWDVRGDSLLCSSFSKCLAPGFRV
GWVVAGPHAERIQRLQLMSTLSTNVPSQLALAEMLRQGGVDAHFRRLRHTLAQRQQQMRAALLRLFPDEVRISAPDGGYF
LWLEFDPRLDSRALHARALTCGFSLAPGALFSSQGQYNHCLRLNSSHPWSEQLESALAQLAELIHQQLAPHLDAGNNNAP

Sequences:

>Translated_480_residues
MSLYGQLADQLQQQIASGVWQAGERIPSIRQSCKIHHLSPMTVLQAYQLLESRGLILARPQSGYYVKAAPSPLRASAQQQ
AHYTGSVDINDLVFEVLQASKSRELVPLGMSVADQTLFPHPQLGRALASCMRKLDPFSTVADLPPGNEALRRAIAQRYAS
DGLAVSPQEIIITTGAMEALSLSLQVLTEPGDWVVVESPTFYGALQAIERLKLNAVEIPVIPGVGIDLALLAEALAQRPI
KACWLMGNVQHPLGHTMPDGHKQALMQLLSQHEVPLVEDDVYADLYFGRERPKPLKCWDVRGDSLLCSSFSKCLAPGFRV
GWVVAGPHAERIQRLQLMSTLSTNVPSQLALAEMLRQGGVDAHFRRLRHTLAQRQQQMRAALLRLFPDEVRISAPDGGYF
LWLEFDPRLDSRALHARALTCGFSLAPGALFSSQGQYNHCLRLNSSHPWSEQLESALAQLAELIHQQLAPHLDAGNNNAP
>Mature_479_residues
SLYGQLADQLQQQIASGVWQAGERIPSIRQSCKIHHLSPMTVLQAYQLLESRGLILARPQSGYYVKAAPSPLRASAQQQA
HYTGSVDINDLVFEVLQASKSRELVPLGMSVADQTLFPHPQLGRALASCMRKLDPFSTVADLPPGNEALRRAIAQRYASD
GLAVSPQEIIITTGAMEALSLSLQVLTEPGDWVVVESPTFYGALQAIERLKLNAVEIPVIPGVGIDLALLAEALAQRPIK
ACWLMGNVQHPLGHTMPDGHKQALMQLLSQHEVPLVEDDVYADLYFGRERPKPLKCWDVRGDSLLCSSFSKCLAPGFRVG
WVVAGPHAERIQRLQLMSTLSTNVPSQLALAEMLRQGGVDAHFRRLRHTLAQRQQQMRAALLRLFPDEVRISAPDGGYFL
WLEFDPRLDSRALHARALTCGFSLAPGALFSSQGQYNHCLRLNSSHPWSEQLESALAQLAELIHQQLAPHLDAGNNNAP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=316, Percent_Identity=25, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI33469970, Length=316, Percent_Identity=25, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4507369, Length=225, Percent_Identity=25.3333333333333, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1787710, Length=473, Percent_Identity=52.2198731501057, Blast_Score=480, Evalue=1e-137,
Organism=Escherichia coli, GI1790797, Length=475, Percent_Identity=36.2105263157895, Blast_Score=292, Evalue=4e-80,
Organism=Escherichia coli, GI1786816, Length=281, Percent_Identity=27.4021352313167, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI48994949, Length=238, Percent_Identity=27.7310924369748, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=346, Percent_Identity=21.0982658959538, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356535, Length=316, Percent_Identity=26.2658227848101, Blast_Score=86, Evalue=8e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52812; Mature: 52681

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYGQLADQLQQQIASGVWQAGERIPSIRQSCKIHHLSPMTVLQAYQLLESRGLILARP
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECC
QSGYYVKAAPSPLRASAQQQAHYTGSVDINDLVFEVLQASKSRELVPLGMSVADQTLFPH
CCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCC
PQLGRALASCMRKLDPFSTVADLPPGNEALRRAIAQRYASDGLAVSPQEIIITTGAMEAL
HHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCEEEEECCHHHHH
SLSLQVLTEPGDWVVVESPTFYGALQAIERLKLNAVEIPVIPGVGIDLALLAEALAQRPI
HHHHHEEECCCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCH
KACWLMGNVQHPLGHTMPDGHKQALMQLLSQHEVPLVEDDVYADLYFGRERPKPLKCWDV
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEC
RGDSLLCSSFSKCLAPGFRVGWVVAGPHAERIQRLQLMSTLSTNVPSQLALAEMLRQGGV
CCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
DAHFRRLRHTLAQRQQQMRAALLRLFPDEVRISAPDGGYFLWLEFDPRLDSRALHARALT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
CGFSLAPGALFSSQGQYNHCLRLNSSHPWSEQLESALAQLAELIHQQLAPHLDAGNNNAP
CCCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SLYGQLADQLQQQIASGVWQAGERIPSIRQSCKIHHLSPMTVLQAYQLLESRGLILARP
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEECC
QSGYYVKAAPSPLRASAQQQAHYTGSVDINDLVFEVLQASKSRELVPLGMSVADQTLFPH
CCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCC
PQLGRALASCMRKLDPFSTVADLPPGNEALRRAIAQRYASDGLAVSPQEIIITTGAMEAL
HHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCEEEEECCHHHHH
SLSLQVLTEPGDWVVVESPTFYGALQAIERLKLNAVEIPVIPGVGIDLALLAEALAQRPI
HHHHHEEECCCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCH
KACWLMGNVQHPLGHTMPDGHKQALMQLLSQHEVPLVEDDVYADLYFGRERPKPLKCWDV
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEC
RGDSLLCSSFSKCLAPGFRVGWVVAGPHAERIQRLQLMSTLSTNVPSQLALAEMLRQGGV
CCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
DAHFRRLRHTLAQRQQQMRAALLRLFPDEVRISAPDGGYFLWLEFDPRLDSRALHARALT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
CGFSLAPGALFSSQGQYNHCLRLNSSHPWSEQLESALAQLAELIHQQLAPHLDAGNNNAP
CCCCCCCCHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]