Click here to switch to the map view.

The map label for this gene is ycaC [C]

Identifier: 145299475

GI number: 145299475

Start: 2710182

End: 2710721

Strand: Direct

Name: ycaC [C]

Synonym: ASA_2539

Alternate gene names: 145299475

Gene position: 2710182-2710721 (Clockwise)

Preceding gene: 145299474

Following gene: 145299476

Centisome position: 57.63

GC content: 65.0

Gene sequence:

>540_bases
ATGCTGACCGCCTCTACCACAGGCCTGCTGGTCGTCGATATTCAGGGCAAGCTGGCACGGCTCGTTGAGGGGAGCCCGGC
CCTGATTGCCAATAGCGCACGGCTGGTACAAGGGGCCCAGGCACTGGGCTTGCCGGTTGTCTGGCTGGAACAGAATCCGG
ACAAGCTGGGGCCAACGGTGCCCGAGTTGCAGCCGCTGCAGAGCGGTGCCCCCGTGCTGACAAAATTCAGCTTCGGCGCG
CTGGGGGAGCCAGCAGTGGCAGCCGCCCTCGCTCGGACCGGCAGATGCCACTGGCTGGTGTGCGGCATAGAGGCCCATAT
CTGCGTCTACCAGACTGTGCTGGGACTGCTCGACAGCGGCGCCGATGTCTCCCTGGTGGTGGATGCGGTGTCCTCCCGCA
GCGCCGCCAACCGCGACTTGGCCATCGCTCAGCTTGCCACTCGTGGAGCGCGGCTCACCTCGGTGGAAATGTGCCTCTAT
GAGCTGCTGGGGGATTGCCGCCATCCGGCGTTTCGCCCGATCCTGGCCTTGATCAAATAA

Upstream 100 bases:

>100_bases
ACCGCCATCGCGCTGACCCTCATCTATTTGTGGAACCAGTCGCGTACATCTGTCATCCGTCCACTGGGCGCCACACTCTG
ATCTGATCCAAGGAGCCATC

Downstream 100 bases:

>100_bases
CGGCTGACCACTCTCGGTCAGCACCTCACAAAAACGCGGCGCCACTGGCGCCGTTTTTATTATCGCTTGGGCACAAAACC
CGCTGTTCGGTATGGCAGGC

Product: isochorismatase family protein

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Superfamily Hydrolase; Isochorismatase Hydrolase Family Protein; Nicotinamidase-Like Amidase; Isochorismatase Family Hydrolase; YcaC-Related Amidohydrolase; Isochorismatase Domain-Containing; Hydrolase Isochorismatase; Hydrolase; Isochorismatase Domain-Containing A; Isochorismatase Hydrolase Family; Hydrolase Isochorismatase Family; Amidase Related Nicotinamidase; Isochorismatase Family; Nicotinamidase-Related Amidase; Nicotinamidase

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MLTASTTGLLVVDIQGKLARLVEGSPALIANSARLVQGAQALGLPVVWLEQNPDKLGPTVPELQPLQSGAPVLTKFSFGA
LGEPAVAAALARTGRCHWLVCGIEAHICVYQTVLGLLDSGADVSLVVDAVSSRSAANRDLAIAQLATRGARLTSVEMCLY
ELLGDCRHPAFRPILALIK

Sequences:

>Translated_179_residues
MLTASTTGLLVVDIQGKLARLVEGSPALIANSARLVQGAQALGLPVVWLEQNPDKLGPTVPELQPLQSGAPVLTKFSFGA
LGEPAVAAALARTGRCHWLVCGIEAHICVYQTVLGLLDSGADVSLVVDAVSSRSAANRDLAIAQLATRGARLTSVEMCLY
ELLGDCRHPAFRPILALIK
>Mature_179_residues
MLTASTTGLLVVDIQGKLARLVEGSPALIANSARLVQGAQALGLPVVWLEQNPDKLGPTVPELQPLQSGAPVLTKFSFGA
LGEPAVAAALARTGRCHWLVCGIEAHICVYQTVLGLLDSGADVSLVVDAVSSRSAANRDLAIAQLATRGARLTSVEMCLY
ELLGDCRHPAFRPILALIK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI209969695, Length=172, Percent_Identity=40.1162790697674, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI103471987, Length=179, Percent_Identity=39.1061452513966, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI13376007, Length=188, Percent_Identity=36.7021276595745, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17540156, Length=178, Percent_Identity=37.0786516853933, Blast_Score=116, Evalue=6e-27,
Organism=Drosophila melanogaster, GI21357489, Length=180, Percent_Identity=31.6666666666667, Blast_Score=93, Evalue=9e-20,
Organism=Drosophila melanogaster, GI19922924, Length=181, Percent_Identity=30.3867403314917, Blast_Score=88, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18730; Mature: 18730

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTASTTGLLVVDIQGKLARLVEGSPALIANSARLVQGAQALGLPVVWLEQNPDKLGPTV
CCCCCCCCEEEEECCCHHHHHHCCCCCEEECCHHHHHCHHHHCCCEEEEECCCHHCCCCC
PELQPLQSGAPVLTKFSFGALGEPAVAAALARTGRCHWLVCGIEAHICVYQTVLGLLDSG
CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCC
ADVSLVVDAVSSRSAANRDLAIAQLATRGARLTSVEMCLYELLGDCRHPAFRPILALIK
CCCEEEEEHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MLTASTTGLLVVDIQGKLARLVEGSPALIANSARLVQGAQALGLPVVWLEQNPDKLGPTV
CCCCCCCCEEEEECCCHHHHHHCCCCCEEECCHHHHHCHHHHCCCEEEEECCCHHCCCCC
PELQPLQSGAPVLTKFSFGALGEPAVAAALARTGRCHWLVCGIEAHICVYQTVLGLLDSG
CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCC
ADVSLVVDAVSSRSAANRDLAIAQLATRGARLTSVEMCLYELLGDCRHPAFRPILALIK
CCCEEEEEHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA