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The map label for this gene is algU [H]

Identifier: 145297083

GI number: 145297083

Start: 3304440

End: 3305045

Strand: Direct

Name: algU [H]

Synonym: cgR_2979

Alternate gene names: 145297083

Gene position: 3304440-3305045 (Clockwise)

Preceding gene: 145297082

Following gene: 145297084

Centisome position: 99.71

GC content: 51.82

Gene sequence:

>606_bases
ATGACAGTACTGCCTAAAAACCATGACCTAAGCGATACCCAACTCGTCAAACAGTTTATATCTGGCGACTCCAGGGCATT
TTCCACCATCATTCACCGCCACGAACGACATATGATGCAGGCGGCCAGAAAATACGGGCGGAAACCAGAAGACGCCCAAG
ACATTCTCCAAGAAGCTCTCTTTCGCGCCAGCCGAAACATGCACCTTTATAGAGCAGAAGCAGCTCTCGGCACATGGCTC
CACAAATTAGTTTTGAACAGCGGCTTCGATTGGGCCACCCACCGCTCCCAAGTAGAATTCCCCATCCTTAACGAACCAAC
AATCGATTTAGAAAAAGATCCTCGCCTAGCCACCGACCCCTTGGGCTACCTCGATGTCGCCATGACAATTCGATCCGCCA
TCGACCAATTACACCCCGATCAACGCATCGCCTTAATACTTGTCGACCTCGGCGGCTACACCGTAGAAGATGTGGCCGAA
ATCGAAGGAATCAAAGTAGGTACCGTTAAATCACGCCGAGGGCGCGCACGCAAAGCGTTGCGCGCCCTTTTACATGCAGA
TTTCTTCGGGCCCGAAGATGGCTCCATACAGTGCGAAAGCAACTGA

Upstream 100 bases:

>100_bases
CACTTGAGTGGGCGCCGAGAAGTATCTCTCAATGGAAAATCTGCCCATACTAAGCCGCATAAGGGATACGGGGTGTGTCC
CTCAACCTGCGGGGGATCTT

Downstream 100 bases:

>100_bases
TGGAAGTTTTTCAAAGTGTCTGACGTTGAAAACGGTGAGTTCACAACTAGGGTGAATGGTGCACGTGATGCTGCACTTTT
ACGTTTACTACTTTGAGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTVLPKNHDLSDTQLVKQFISGDSRAFSTIIHRHERHMMQAARKYGRKPEDAQDILQEALFRASRNMHLYRAEAALGTWL
HKLVLNSGFDWATHRSQVEFPILNEPTIDLEKDPRLATDPLGYLDVAMTIRSAIDQLHPDQRIALILVDLGGYTVEDVAE
IEGIKVGTVKSRRGRARKALRALLHADFFGPEDGSIQCESN

Sequences:

>Translated_201_residues
MTVLPKNHDLSDTQLVKQFISGDSRAFSTIIHRHERHMMQAARKYGRKPEDAQDILQEALFRASRNMHLYRAEAALGTWL
HKLVLNSGFDWATHRSQVEFPILNEPTIDLEKDPRLATDPLGYLDVAMTIRSAIDQLHPDQRIALILVDLGGYTVEDVAE
IEGIKVGTVKSRRGRARKALRALLHADFFGPEDGSIQCESN
>Mature_200_residues
TVLPKNHDLSDTQLVKQFISGDSRAFSTIIHRHERHMMQAARKYGRKPEDAQDILQEALFRASRNMHLYRAEAALGTWLH
KLVLNSGFDWATHRSQVEFPILNEPTIDLEKDPRLATDPLGYLDVAMTIRSAIDQLHPDQRIALILVDLGGYTVEDVAEI
EGIKVGTVKSRRGRARKALRALLHADFFGPEDGSIQCESN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=182, Percent_Identity=26.3736263736264, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22723; Mature: 22592

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLPKNHDLSDTQLVKQFISGDSRAFSTIIHRHERHMMQAARKYGRKPEDAQDILQEAL
CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FRASRNMHLYRAEAALGTWLHKLVLNSGFDWATHRSQVEFPILNEPTIDLEKDPRLATDP
HHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LGYLDVAMTIRSAIDQLHPDQRIALILVDLGGYTVEDVAEIEGIKVGTVKSRRGRARKAL
CHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCEEECCCHHHHHHHHHH
RALLHADFFGPEDGSIQCESN
HHHHHHHCCCCCCCCEEECCC
>Mature Secondary Structure 
TVLPKNHDLSDTQLVKQFISGDSRAFSTIIHRHERHMMQAARKYGRKPEDAQDILQEAL
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FRASRNMHLYRAEAALGTWLHKLVLNSGFDWATHRSQVEFPILNEPTIDLEKDPRLATDP
HHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
LGYLDVAMTIRSAIDQLHPDQRIALILVDLGGYTVEDVAEIEGIKVGTVKSRRGRARKAL
CHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHCCCEEECCCHHHHHHHHHH
RALLHADFFGPEDGSIQCESN
HHHHHHHCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]