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The map label for this gene is ydfH [C]

Identifier: 145296922

GI number: 145296922

Start: 3135163

End: 3135891

Strand: Direct

Name: ydfH [C]

Synonym: cgR_2822

Alternate gene names: 145296922

Gene position: 3135163-3135891 (Clockwise)

Preceding gene: 145296920

Following gene: 145296923

Centisome position: 94.6

GC content: 49.38

Gene sequence:

>729_bases
ATGTCCAATGAAAATTGGCCAGATCATGTAGATACCCAAAGGTTTTCACGATTAACACTTAAATCGTCCACAGAGGAGCT
TTTACGCAATTACCTCCTTGACGGCGACATGAAACCTGGTGAAATCTACTCCGCCAACGCCTTGGCTAAAAAACTTGGCA
CCTCAAATAGTCCAGTGCGCGAGGCCATGACTTCACTAGTACATAGAGGCCTACTTGAGCTTGTGCCCAATCGAGGATTT
CGGGTCATCGAATTAACAGAACAGGATCATCGCGAGATCTACATTCTGCGATCAATTGTTGAAGTACAGGCAGTTCGAGA
ACTTGCCCGACGCGGCATTACAGCAGATCAAGGCAGTGAATTACACCGGCTCGCAGCCCAAACCCTCACTATTATTACTG
CAAAAAATCCCCCCGACCTCACTAAGTACCTCGAGGCGGATGACGCATTTCATGGCTACCTGATCACGCTTTTAGACAAT
CGACGCCTCCAAGACATTGTCCTTAACCTTCGCGACCAGTCTCGAATTAATGGTGCTTATCGACGCCTCCCAGAACAAGG
TTTGCTCATTCCTAGCGCGCAAGAGCATATTGAACTTGCTACTGCCATCGTCTCCCAGGAGCCTGAAAATGCCGCGCGCG
TCATGCTCCAACATCTTGAATATGCGCGCCCAAAATCCCTCAGCCCCGAGATTGAACCCGCGCTCCACATGGACTACCCA
ACAGCTTAA

Upstream 100 bases:

>100_bases
CATTGAGTTATCGATAACCAATAGTCGTTTGCGGAAATTTCTCAAACATTTTCACCTGCGTATACTATTCAACAACTAAC
AATCTTCCCAAGGAGTCCTC

Downstream 100 bases:

>100_bases
CGTGCACGAATAGTGTTGTAGATAAAATCTTTTTAAAAAAGTGGTGCAAACCACTTTCTTTTCTTGTACGGTTATCGATA
AGCGGTAATCAAGTAGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Gntr Family; GntR-Family Regulatory Protein; GntR Family Regulatory Protein; Transcriptional Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Domain-Containing Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator MdcY Family Protein; FCD Domain Protein; GntR Family Regulator; GntR Regulatory Protein; Transcriptional Regulator GntR-Type

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSNENWPDHVDTQRFSRLTLKSSTEELLRNYLLDGDMKPGEIYSANALAKKLGTSNSPVREAMTSLVHRGLLELVPNRGF
RVIELTEQDHREIYILRSIVEVQAVRELARRGITADQGSELHRLAAQTLTIITAKNPPDLTKYLEADDAFHGYLITLLDN
RRLQDIVLNLRDQSRINGAYRRLPEQGLLIPSAQEHIELATAIVSQEPENAARVMLQHLEYARPKSLSPEIEPALHMDYP
TA

Sequences:

>Translated_242_residues
MSNENWPDHVDTQRFSRLTLKSSTEELLRNYLLDGDMKPGEIYSANALAKKLGTSNSPVREAMTSLVHRGLLELVPNRGF
RVIELTEQDHREIYILRSIVEVQAVRELARRGITADQGSELHRLAAQTLTIITAKNPPDLTKYLEADDAFHGYLITLLDN
RRLQDIVLNLRDQSRINGAYRRLPEQGLLIPSAQEHIELATAIVSQEPENAARVMLQHLEYARPKSLSPEIEPALHMDYP
TA
>Mature_241_residues
SNENWPDHVDTQRFSRLTLKSSTEELLRNYLLDGDMKPGEIYSANALAKKLGTSNSPVREAMTSLVHRGLLELVPNRGFR
VIELTEQDHREIYILRSIVEVQAVRELARRGITADQGSELHRLAAQTLTIITAKNPPDLTKYLEADDAFHGYLITLLDNR
RLQDIVLNLRDQSRINGAYRRLPEQGLLIPSAQEHIELATAIVSQEPENAARVMLQHLEYARPKSLSPEIEPALHMDYPT
A

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=197, Percent_Identity=27.4111675126904, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27437; Mature: 27305

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNENWPDHVDTQRFSRLTLKSSTEELLRNYLLDGDMKPGEIYSANALAKKLGTSNSPVR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCHHH
EAMTSLVHRGLLELVPNRGFRVIELTEQDHREIYILRSIVEVQAVRELARRGITADQGSE
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
LHRLAAQTLTIITAKNPPDLTKYLEADDAFHGYLITLLDNRRLQDIVLNLRDQSRINGAY
HHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
RRLPEQGLLIPSAQEHIELATAIVSQEPENAARVMLQHLEYARPKSLSPEIEPALHMDYP
HHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TA
CC
>Mature Secondary Structure 
SNENWPDHVDTQRFSRLTLKSSTEELLRNYLLDGDMKPGEIYSANALAKKLGTSNSPVR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCHHH
EAMTSLVHRGLLELVPNRGFRVIELTEQDHREIYILRSIVEVQAVRELARRGITADQGSE
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
LHRLAAQTLTIITAKNPPDLTKYLEADDAFHGYLITLLDNRRLQDIVLNLRDQSRINGAY
HHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
RRLPEQGLLIPSAQEHIELATAIVSQEPENAARVMLQHLEYARPKSLSPEIEPALHMDYP
HHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA