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The map label for this gene is licT [H]

Identifier: 145296824

GI number: 145296824

Start: 3017544

End: 3018413

Strand: Reverse

Name: licT [H]

Synonym: cgR_2727

Alternate gene names: 145296824

Gene position: 3018413-3017544 (Counterclockwise)

Preceding gene: 145296826

Following gene: 145296821

Centisome position: 91.08

GC content: 53.56

Gene sequence:

>870_bases
GTGAAAGTGTTGAGAGTGCTCAACAATAATGTTGTGCTTGCCATCAAAGACGGTGCCGAGGTGGTGCTGACCGGATGGGG
TGTGGGTTTCCAGAAGAAGCCTGGTGAAGACGTTGATCAGAGCAAGGTCACGCAGGTTTTCGTTCCTGAAAACAATCGCG
ACGCTGATCATATGGCCAGTCTTTTGGCCGAAGTGCCACTGGAATACCTCGACCTATCCACTGAACTGATCGCATCGGTA
TCGGCTGAACTTGATTCCCCAGTGGGCAGCGCAACGGTGGTGGCGTTGGCGGATCACCTTCAAATGGCGGTGAAACGTAA
TGGGTTGGAACCCGAGCTGACCTCCAAACCCAACCCATTAAGCGCAGAAGTGCATCATTTGTATCCTGAGGAAACTCGTC
TTGCAACGGAGATCCTGGAACGCACCAACAATTGGCTTGCTGAAAAAGGGACCCCTCCGCTGCCACCAGCGGAAGTTGTA
GCCATCTCATTACACCTGGTTAATGCTGGTTTCCGCACGGAAGACCTCGCAGAAACCTACGTGATGACTGGCGTTTTCGA
GCAGCTCTTTGAGGTAATCGATTCCTCGTTTGGCATCACCCTTGACCGACAATCCGTCAACGCCGCACGGTTTATCACCC
ACATGCGCTACTTCTTTGTTCGCGTTCACCATGATGGCCAACTCAACGACGGCATGTCCGTGCTGCGCAACAGCCTAGAA
ATCTCACACCCAGACTCGGTGGCATGCGCGGAAAGACTCAGCCAAATCCTCAGTCTCCGATTGGGTGCCGAGCTTTCCTC
CGACGAGCAAACCTACCTCGCGCTCCATGTCGCGAGGTTGGCTGAAGATCGAGGTACTACCGCTGATTAA

Upstream 100 bases:

>100_bases
AAAGTCCTTCGACTGGTACCGCGATGTCATCGCAACCAACGGTGGAAGCCTGCAGGCTTAAGAACTGCCGGTTTAAGTGA
AAAAGGGAGGTGTCACCTCG

Downstream 100 bases:

>100_bases
CAAGCTCTAGGCGCGAATCTTTATTAAGGTGCGCGCCGAAAGCTTCTTGGCCAGGTTCCAAAATACGGCCGTTTTCCAAT
GCGCCAATATTTAAAGGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKVLRVLNNNVVLAIKDGAEVVLTGWGVGFQKKPGEDVDQSKVTQVFVPENNRDADHMASLLAEVPLEYLDLSTELIASV
SAELDSPVGSATVVALADHLQMAVKRNGLEPELTSKPNPLSAEVHHLYPEETRLATEILERTNNWLAEKGTPPLPPAEVV
AISLHLVNAGFRTEDLAETYVMTGVFEQLFEVIDSSFGITLDRQSVNAARFITHMRYFFVRVHHDGQLNDGMSVLRNSLE
ISHPDSVACAERLSQILSLRLGAELSSDEQTYLALHVARLAEDRGTTAD

Sequences:

>Translated_289_residues
MKVLRVLNNNVVLAIKDGAEVVLTGWGVGFQKKPGEDVDQSKVTQVFVPENNRDADHMASLLAEVPLEYLDLSTELIASV
SAELDSPVGSATVVALADHLQMAVKRNGLEPELTSKPNPLSAEVHHLYPEETRLATEILERTNNWLAEKGTPPLPPAEVV
AISLHLVNAGFRTEDLAETYVMTGVFEQLFEVIDSSFGITLDRQSVNAARFITHMRYFFVRVHHDGQLNDGMSVLRNSLE
ISHPDSVACAERLSQILSLRLGAELSSDEQTYLALHVARLAEDRGTTAD
>Mature_289_residues
MKVLRVLNNNVVLAIKDGAEVVLTGWGVGFQKKPGEDVDQSKVTQVFVPENNRDADHMASLLAEVPLEYLDLSTELIASV
SAELDSPVGSATVVALADHLQMAVKRNGLEPELTSKPNPLSAEVHHLYPEETRLATEILERTNNWLAEKGTPPLPPAEVV
AISLHLVNAGFRTEDLAETYVMTGVFEQLFEVIDSSFGITLDRQSVNAARFITHMRYFFVRVHHDGQLNDGMSVLRNSLE
ISHPDSVACAERLSQILSLRLGAELSSDEQTYLALHVARLAEDRGTTAD

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=284, Percent_Identity=27.8169014084507, Blast_Score=134, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 31746; Mature: 31746

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLRVLNNNVVLAIKDGAEVVLTGWGVGFQKKPGEDVDQSKVTQVFVPENNRDADHMAS
CCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
LLAEVPLEYLDLSTELIASVSAELDSPVGSATVVALADHLQMAVKRNGLEPELTSKPNPL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
SAEVHHLYPEETRLATEILERTNNWLAEKGTPPLPPAEVVAISLHLVNAGFRTEDLAETY
CCHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHEEEEEEEECCCCCCHHHHHHH
VMTGVFEQLFEVIDSSFGITLDRQSVNAARFITHMRYFFVRVHHDGQLNDGMSVLRNSLE
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCC
ISHPDSVACAERLSQILSLRLGAELSSDEQTYLALHVARLAEDRGTTAD
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVLRVLNNNVVLAIKDGAEVVLTGWGVGFQKKPGEDVDQSKVTQVFVPENNRDADHMAS
CCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHH
LLAEVPLEYLDLSTELIASVSAELDSPVGSATVVALADHLQMAVKRNGLEPELTSKPNPL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
SAEVHHLYPEETRLATEILERTNNWLAEKGTPPLPPAEVVAISLHLVNAGFRTEDLAETY
CCHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHEEEEEEEECCCCCCHHHHHHH
VMTGVFEQLFEVIDSSFGITLDRQSVNAARFITHMRYFFVRVHHDGQLNDGMSVLRNSLE
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCC
ISHPDSVACAERLSQILSLRLGAELSSDEQTYLALHVARLAEDRGTTAD
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]