Click here to switch to the map view.

The map label for this gene is yrbE [H]

Identifier: 145296547

GI number: 145296547

Start: 2706067

End: 2707230

Strand: Direct

Name: yrbE [H]

Synonym: cgR_2456

Alternate gene names: 145296547

Gene position: 2706067-2707230 (Clockwise)

Preceding gene: 145296546

Following gene: 145296548

Centisome position: 81.65

GC content: 53.69

Gene sequence:

>1164_bases
ATGAGCAAGAAAATCCGCCTAGGAATCATCGGCCTCGGAGCCGAAGGTGGAATGTACGCAAACTTCCTTCAGGAAGGCCG
CGTGGAGAACATGGAGATCGGCGCAATCTGCGACATCCTCCCAGAAAAGAAGGAGAAGGCCGATGAGTACGGTGTTCCTT
TCTACTCTGACTACAAGGAACTGATCACTTCCGGCGATGTTGACGCAATTGTCACCACCGTTCCTCACTACCTCCACCCT
GAAATGGGTATCTTCGCCCTGGAGAACAACATTCACGCATTGGTTGAGAAGCCAGTTGGTGTGTACACCAAGCAGGCTAA
CGAGCTGATCGAGTTCGCAAAGACGAAGCCTGAGCTGAAGTTCGGTGTGTTCTTCAATCAGCGCACCAACCAGCTGTACA
AGGATCTCAAAGACATCATGGATTCCGGTGAGCTGGGCAAACTGCGCCACACCTCCTGGATTATCACTACTTGGTGGCGT
CCGCAGGGTTACTACAACCAGTCTGATTGGCGTGCAACCTGGGGCGGCGAGGGCGGCGGTGTTCTGGTTAACCAGGCTCC
TCACCAGCTTGACCTGTGGCAGTGGATCTGCGGAACCCCAGAGAAGGTTTTCGCACGCAACGCTTACGGTTTCCGTCGCG
ACATCGCTGTTGAGGATGAAGTCCACGCACTTGTGTCCTTCCCAGATGGCGCATCCGGCGCGTTCATCACCTGTACTCAC
GACCTGATCGGCACTGACCGCCTGGAAATCCTGTGCGATAAGGGCAAGATCGTTGTCGACGATTCCAACAAGGTCACCAT
CTCACGCCTCGTAGAAAATGAAGAAGTTCTGTCCAAGGGCATGGACATGGAAGATGTGAAGAAACTCTTCACCGGCCAGC
TCGATATGGATCAGTACGTTTCCGTGGAGACCAAGGAATACGAGTCCGTGTGGGGCGAGCAGCACTGCGACGTTATGCGT
AACTTCGCTGCAGCAATCAACGGTGAGGAAGAACTCCTCGCACCAGGTAGCGACGGCATCTACGGTGTTCAGCTGGCAAA
CGGCATTCACCTCTCCTCCTGGACTGGCAAGGAAATTGACTTGGTTAACTTCGACGAAGAAACCTACCTCGAAGAGCTCA
ACAAGCGCATCGAGGCTGAAGGAAAGTTTGAGGTGCGTAACTAA

Upstream 100 bases:

>100_bases
GTCCGCTGAGTCTGCTTAGCCCACATACTCTGCAGGGTGCATAGTCTGCTGGGTCTGCTTACCCTGCCTACAAAATCTAA
TCGCAAATAAGGAGCATTAA

Downstream 100 bases:

>100_bases
TGGCTGACATCGGAGTACAAATGATGATGCTCAAGGACCAGGTCGCCGAACTCGGCATGTACCCAGTTCTTGAAAAGCTC
AAAGAACTCAACATCGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MSKKIRLGIIGLGAEGGMYANFLQEGRVENMEIGAICDILPEKKEKADEYGVPFYSDYKELITSGDVDAIVTTVPHYLHP
EMGIFALENNIHALVEKPVGVYTKQANELIEFAKTKPELKFGVFFNQRTNQLYKDLKDIMDSGELGKLRHTSWIITTWWR
PQGYYNQSDWRATWGGEGGGVLVNQAPHQLDLWQWICGTPEKVFARNAYGFRRDIAVEDEVHALVSFPDGASGAFITCTH
DLIGTDRLEILCDKGKIVVDDSNKVTISRLVENEEVLSKGMDMEDVKKLFTGQLDMDQYVSVETKEYESVWGEQHCDVMR
NFAAAINGEEELLAPGSDGIYGVQLANGIHLSSWTGKEIDLVNFDEETYLEELNKRIEAEGKFEVRN

Sequences:

>Translated_387_residues
MSKKIRLGIIGLGAEGGMYANFLQEGRVENMEIGAICDILPEKKEKADEYGVPFYSDYKELITSGDVDAIVTTVPHYLHP
EMGIFALENNIHALVEKPVGVYTKQANELIEFAKTKPELKFGVFFNQRTNQLYKDLKDIMDSGELGKLRHTSWIITTWWR
PQGYYNQSDWRATWGGEGGGVLVNQAPHQLDLWQWICGTPEKVFARNAYGFRRDIAVEDEVHALVSFPDGASGAFITCTH
DLIGTDRLEILCDKGKIVVDDSNKVTISRLVENEEVLSKGMDMEDVKKLFTGQLDMDQYVSVETKEYESVWGEQHCDVMR
NFAAAINGEEELLAPGSDGIYGVQLANGIHLSSWTGKEIDLVNFDEETYLEELNKRIEAEGKFEVRN
>Mature_386_residues
SKKIRLGIIGLGAEGGMYANFLQEGRVENMEIGAICDILPEKKEKADEYGVPFYSDYKELITSGDVDAIVTTVPHYLHPE
MGIFALENNIHALVEKPVGVYTKQANELIEFAKTKPELKFGVFFNQRTNQLYKDLKDIMDSGELGKLRHTSWIITTWWRP
QGYYNQSDWRATWGGEGGGVLVNQAPHQLDLWQWICGTPEKVFARNAYGFRRDIAVEDEVHALVSFPDGASGAFITCTHD
LIGTDRLEILCDKGKIVVDDSNKVTISRLVENEEVLSKGMDMEDVKKLFTGQLDMDQYVSVETKEYESVWGEQHCDVMRN
FAAAINGEEELLAPGSDGIYGVQLANGIHLSSWTGKEIDLVNFDEETYLEELNKRIEAEGKFEVRN

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=229, Percent_Identity=31.0043668122271, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24581117, Length=267, Percent_Identity=24.3445692883895, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 43666; Mature: 43535

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKIRLGIIGLGAEGGMYANFLQEGRVENMEIGAICDILPEKKEKADEYGVPFYSDYKE
CCCEEEEEEEEECCCCCHHHHHHHCCCCCCEEHHHHHHCCCCHHHHHHHCCCCCHHHHHH
LITSGDVDAIVTTVPHYLHPEMGIFALENNIHALVEKPVGVYTKQANELIEFAKTKPELK
HHCCCCHHHHHHHCCHHHCCCCCEEEECCCHHEECCCCCCHHHHHHHHHHHHHHCCCCEE
FGVFFNQRTNQLYKDLKDIMDSGELGKLRHTSWIITTWWRPQGYYNQSDWRATWGGEGGG
EEEEECHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEEECCCCCCCCCCCEEECCCCCCC
VLVNQAPHQLDLWQWICGTPEKVFARNAYGFRRDIAVEDEVHALVSFPDGASGAFITCTH
EEECCCCCHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCEEEEEECCCCCCCCEEEEEH
DLIGTDRLEILCDKGKIVVDDSNKVTISRLVENEEVLSKGMDMEDVKKLFTGQLDMDQYV
HHCCCCCEEEEECCCEEEEECCCCEEHHHHHCCHHHHHCCCCHHHHHHHHCCCCCHHHHE
SVETKEYESVWGEQHCDVMRNFAAAINGEEELLAPGSDGIYGVQLANGIHLSSWTGKEID
EECCHHHHHHCCHHHHHHHHHHHHHCCCCHHEECCCCCCEEEEEEECCEEEECCCCCEEE
LVNFDEETYLEELNKRIEAEGKFEVRN
EEECCHHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure 
SKKIRLGIIGLGAEGGMYANFLQEGRVENMEIGAICDILPEKKEKADEYGVPFYSDYKE
CCEEEEEEEEECCCCCHHHHHHHCCCCCCEEHHHHHHCCCCHHHHHHHCCCCCHHHHHH
LITSGDVDAIVTTVPHYLHPEMGIFALENNIHALVEKPVGVYTKQANELIEFAKTKPELK
HHCCCCHHHHHHHCCHHHCCCCCEEEECCCHHEECCCCCCHHHHHHHHHHHHHHCCCCEE
FGVFFNQRTNQLYKDLKDIMDSGELGKLRHTSWIITTWWRPQGYYNQSDWRATWGGEGGG
EEEEECHHHHHHHHHHHHHHCCCCCCCEECCEEEEEEEECCCCCCCCCCCEEECCCCCCC
VLVNQAPHQLDLWQWICGTPEKVFARNAYGFRRDIAVEDEVHALVSFPDGASGAFITCTH
EEECCCCCHHHHHHHHCCCCHHHHHCCCCCCEECCCCCCCEEEEEECCCCCCCCEEEEEH
DLIGTDRLEILCDKGKIVVDDSNKVTISRLVENEEVLSKGMDMEDVKKLFTGQLDMDQYV
HHCCCCCEEEEECCCEEEEECCCCEEHHHHHCCHHHHHCCCCHHHHHHHHCCCCCHHHHE
SVETKEYESVWGEQHCDVMRNFAAAINGEEELLAPGSDGIYGVQLANGIHLSSWTGKEID
EECCHHHHHHCCHHHHHHHHHHHHHCCCCHHEECCCCCCEEEEEEECCEEEECCCCCEEE
LVNFDEETYLEELNKRIEAEGKFEVRN
EEECCHHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]