Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 145296512

GI number: 145296512

Start: 2664004

End: 2664306

Strand: Reverse

Name: clpS [H]

Synonym: cgR_2423

Alternate gene names: 145296512

Gene position: 2664306-2664004 (Counterclockwise)

Preceding gene: 145296517

Following gene: 145296511

Centisome position: 80.39

GC content: 53.47

Gene sequence:

>303_bases
ATGTCGTCACCTTCTGCGCCGCTTGCCACGCCAGATGTTGAGCTTGATGTGCACACGTTGTCGAGCGAAAACCTGCCTTG
GTTGTGCATCGTGTGGGATGATCCGGTCAATTTGATGAGCTATGTGACCTACGTTTTTCAGACTGTGTTGGGCTTCAGTA
AGAAGAGGGCCACTGAGCTGATGATGCAGGTGCACACCGAAGGTAAAGCCGTGGTGAGTTCTGGCGAGAAGGACAAGGTG
GAGGGTGATGTGAAAAAACTCCACACCGCAGGGCTATGGGCAACAATGCAGCAGGCAGGGTAG

Upstream 100 bases:

>100_bases
CGCATAGTTGTTGACTAGGCTATTTGTCATGAATAGGCAAAACCAACTTCACTACCCGCAGGAAGTGAAGGCAGTGGAAA
GTGTGGAATCAAGCTTGAAC

Downstream 100 bases:

>100_bases
GGGGTTTTCATGCAGCAGTGGAAGAAGAAAAAAGGGCTGATGCGCCAGGCTCGTTACGCGGTGGTTTTTGAGCCGATGGA
GCGGGAAGTGTTGGGTGATT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MSSPSAPLATPDVELDVHTLSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGFSKKRATELMMQVHTEGKAVVSSGEKDKV
EGDVKKLHTAGLWATMQQAG

Sequences:

>Translated_100_residues
MSSPSAPLATPDVELDVHTLSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGFSKKRATELMMQVHTEGKAVVSSGEKDKV
EGDVKKLHTAGLWATMQQAG
>Mature_99_residues
SSPSAPLATPDVELDVHTLSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGFSKKRATELMMQVHTEGKAVVSSGEKDKVE
GDVKKLHTAGLWATMQQAG

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 10980; Mature: 10848

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPSAPLATPDVELDVHTLSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGFSKKRATEL
CCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHH
MMQVHTEGKAVVSSGEKDKVEGDVKKLHTAGLWATMQQAG
HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSPSAPLATPDVELDVHTLSSENLPWLCIVWDDPVNLMSYVTYVFQTVLGFSKKRATEL
CCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHH
MMQVHTEGKAVVSSGEKDKVEGDVKKLHTAGLWATMQQAG
HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]