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The map label for this gene is yocS [H]

Identifier: 145296293

GI number: 145296293

Start: 2437173

End: 2438147

Strand: Reverse

Name: yocS [H]

Synonym: cgR_2209

Alternate gene names: 145296293

Gene position: 2438147-2437173 (Counterclockwise)

Preceding gene: 145296295

Following gene: 145296291

Centisome position: 73.57

GC content: 52.0

Gene sequence:

>975_bases
GTGTCCAAAACAGAAGAAGGCCGTTCAGCGGCCATAATTATTTACGCGTTTCCAACTTTCATTCTGCTGGGCGCGATCAT
TGCGTTTATCTTCCCGGAACCATTCATTCCGCTGACAAACTACATTAATATCTTCCTCACGATCATCATGTTCACCATGG
GTTTGACCTTGACGGTGCCCGATTTTCAGATGGTGCTTAAACGTCCACTGCCTATCTTGATCGGTGTAGTAGCGCAGTTT
GTCATCATGCCGCTGCTGGCAATCATTGTTGCGAAGATCTTCAACCTCAACCCAGCACTTGCTATTGGTCTGCTCATGCT
TGGATCAGTGCCAGGCGGTACCTCGTCCAACGTGATCGCTTTCCTTGCTCGAGGAGATGTCGCGCTGTCGGTCACCATGA
CCTCCGTATCCACCATTGTTTCCCCAATCATGACGCCTTTCCTCATGCTGATGCTGGCAGGAACTGAAACCGCCGTCGAT
GGTGCTGGCATGGCGTGGACTTTGGTGCAGACAGTGCTTCTACCCGTGATCATTGGCCTGGTCTTGCGCGTCTTCTTGAA
CAAGTGGATCGATAAGATCTTGCCGATTCTTCCTTACCTATCCATCCTGGGCATCGGTGGCGTTGTGTTCGGCGCGGTCG
CTGCCAATGCGGAACGACTCCTGTCTGTTGGACTCATCGTGTTCGTTGCCGTCATCGTGCACAACGTCTTTGGCTATGTA
CTGGGCTACCTCACCGGCCGACTGTTCAAGTTTCCAGAAGCTTCAAACCGCACCATGGCGGTTGAAATCGGAACCCAATC
CGCAGGTCTTGCATCAGGAATGGCTGGACGATTCTTCACCCCAGAAGCTGCCCTTCCAGGTGCTGTCGCAGCGGTGGTCC
ACAACATTACCGGCGCAGTTTACGTTGGGCTGGTACGAAACAGGCCTTTGGCTAAAGCAACAAAAAAGAAGGAAGCAGTC
AAAGTTTCCAACTAA

Upstream 100 bases:

>100_bases
CACTACTGCGTTAAGGTATGAAAGTTCGCACACCAGCGATTTAATTCTGTGCCCACCACTAGCACGACCATTTCAGTTTT
AACTTTCTTGGAGTTTTCTA

Downstream 100 bases:

>100_bases
CTCATTTGTTGCCCGTTAGAGACGTTGAGTTTTTGACACGGGCGTGTCATTGGATTGCTTAGGGTTGGAGCTTCTAACGG
CCATACAGTGAGTCGACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVPDFQMVLKRPLPILIGVVAQF
VIMPLLAIIVAKIFNLNPALAIGLLMLGSVPGGTSSNVIAFLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVD
GAGMAWTLVQTVLLPVIIGLVLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLLSVGLIVFVAVIVHNVFGYV
LGYLTGRLFKFPEASNRTMAVEIGTQSAGLASGMAGRFFTPEAALPGAVAAVVHNITGAVYVGLVRNRPLAKATKKKEAV
KVSN

Sequences:

>Translated_324_residues
MSKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVPDFQMVLKRPLPILIGVVAQF
VIMPLLAIIVAKIFNLNPALAIGLLMLGSVPGGTSSNVIAFLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVD
GAGMAWTLVQTVLLPVIIGLVLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLLSVGLIVFVAVIVHNVFGYV
LGYLTGRLFKFPEASNRTMAVEIGTQSAGLASGMAGRFFTPEAALPGAVAAVVHNITGAVYVGLVRNRPLAKATKKKEAV
KVSN
>Mature_323_residues
SKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVPDFQMVLKRPLPILIGVVAQFV
IMPLLAIIVAKIFNLNPALAIGLLMLGSVPGGTSSNVIAFLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVDG
AGMAWTLVQTVLLPVIIGLVLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLLSVGLIVFVAVIVHNVFGYVL
GYLTGRLFKFPEASNRTMAVEIGTQSAGLASGMAGRFFTPEAALPGAVAAVVHNITGAVYVGLVRNRPLAKATKKKEAVK
VSN

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=257, Percent_Identity=33.4630350194552, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI4506971, Length=254, Percent_Identity=28.740157480315, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI37537552, Length=246, Percent_Identity=24.7967479674797, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=29.3859649122807, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=29.3859649122807, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=29.3859649122807, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI24308414, Length=285, Percent_Identity=29.8245614035088, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI58219066, Length=233, Percent_Identity=30.9012875536481, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115533076, Length=103, Percent_Identity=40.7766990291262, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 34343; Mature: 34212

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVP
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECC
DFQMVLKRPLPILIGVVAQFVIMPLLAIIVAKIFNLNPALAIGLLMLGSVPGGTSSNVIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEE
FLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVDGAGMAWTLVQTVLLPVIIGL
EEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHH
VLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLLSVGLIVFVAVIVHNVFGYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGYLTGRLFKFPEASNRTMAVEIGTQSAGLASGMAGRFFTPEAALPGAVAAVVHNITGAV
HHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YVGLVRNRPLAKATKKKEAVKVSN
HHHHHCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKTEEGRSAAIIIYAFPTFILLGAIIAFIFPEPFIPLTNYINIFLTIIMFTMGLTLTVP
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEECC
DFQMVLKRPLPILIGVVAQFVIMPLLAIIVAKIFNLNPALAIGLLMLGSVPGGTSSNVIA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEE
FLARGDVALSVTMTSVSTIVSPIMTPFLMLMLAGTETAVDGAGMAWTLVQTVLLPVIIGL
EEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHH
VLRVFLNKWIDKILPILPYLSILGIGGVVFGAVAANAERLLSVGLIVFVAVIVHNVFGYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGYLTGRLFKFPEASNRTMAVEIGTQSAGLASGMAGRFFTPEAALPGAVAAVVHNITGAV
HHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YVGLVRNRPLAKATKKKEAVKVSN
HHHHHCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]