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The map label for this gene is ycaJ [C]

Identifier: 145295755

GI number: 145295755

Start: 1868611

End: 1870029

Strand: Reverse

Name: ycaJ [C]

Synonym: cgR_1681

Alternate gene names: 145295755

Gene position: 1870029-1868611 (Counterclockwise)

Preceding gene: 145295756

Following gene: 145295754

Centisome position: 56.43

GC content: 54.47

Gene sequence:

>1419_bases
TTGCTTGGTTGTTTCAGCCAAGCGACTAACCTGTGCACTATGGCCCAGGATTCACTTTTTGAAACGCCCGAAACACCGGG
ATCCGCAGGCAACACAAGCAGCGTGAGCAATTCCAAAGCCGCCTCGAAGTATTTTCACCCAGGCGGACACGCACCCCTTG
CTGCCCGCATGAGGCCAAGGACGCTTGATGAAGTGGTTGGCCAACAGCATTTGCTGGGGGAGGGCAGGCCACTTCGCCGG
CTCATTGAAGGTTCAGGGGATGCCTCCGTCATTTTGTATGGGCCTCCCGGCACTGGAAAAACAACCATTGCCTCATTGAT
TTCTGCAGCTGCAGGCGATCGCTTTGTGGCGATGTCGGCGCTGTCCTCAGGTGTGAAAGAAGTCCGCGCCGTTATTGAAC
GTGCGAGGATGGATCTGCAATTAGGGCAGCGCACCGTGCTGTTTATTGATGAGGTTCATAGGTTTTCCAAAACTCAGCAG
GACGCGTTGCTCTCTGCAGTGGAAAACCGCACCGTGTTGCTCGTTGCAGCGACCACTGAGAACCCCTCCTTTTCAGTGGT
GTCTCCACTGCTGTCCAGGTCCTTGCTGCTCCAGTTGGAATCTTTAAGCGATGAGGATATTAAAACAGTCCTTAATAAAG
CGCTTGAGGATGAACGTGGTCTTGCCGGTCGAATCACCGCCACCGATGAAGCAGTTGACCAGTTGGTTCTTCTTGCCGGT
GGCGATGCCCGCCGAGGCCTGACCTACATTGAAGCCGCTGCAGAAGCCGTAGAAGATGGAGGCGTTTTAGATATTGACAC
CGTCATGGCCAACGTGAACCGCGCAGTGGTCCGCTATGACCGCGATGGCGATCAGCACTATGACGTGGTCAGTGCCTGGA
TCAAATCAATTAGAGGCTCCGATGTAGACGCAGCCTTGCACTACTTGGCGCGCATGATCGATGCCGGTGAAGACCCACGG
TTTATTGCCCGCCGATTGGTGGTTCACTCAAGTGAAGACATCGGTATGGCTGATCCTTCGGCCATGCAAGTAGCCATTGC
TGCAGCTCAAGCTGTCCAATTAATCGGTATGCCAGAGGCGCGGATCAATTTGGCGCAAGCGACCATTCATTTGGCACTAG
CCCCCAAATCCAATGCTGTCATCATGGCCATGGATGCTGCCTTGACTGATGTTCAGCAAGGCCACATCGGTACCGTTCCC
GCGCACCTTCGCGATGGTCACTATGAAGGCGCCAAAAAGCTCGGAAATGCAGTGGGATATTCCTATCCTCACGATGATCC
CAGGGGAGTGGTCCGGCAAGAATATTTACCGGAGAACCTGCGCGATCGGGTCTATTACGAGCCCACCACACACGGTGGAG
AGAAGCGGATTGCCGAGTACATTGGCAGGCTTCGTCGTATAATCCGCGGAACCAAGTAG

Upstream 100 bases:

>100_bases
TTGCAGCGCGCGGGCTGGATTCCAGGTTCCCTGAGGTGGCACGATTCGCAGACGACGTGGTGCGTTTGTTCCTCAAAAAT
GACTAGCTGAAGAGCACCGG

Downstream 100 bases:

>100_bases
CCCGGGTTGCTCAACACCTAGTGGAGACGGGTAAAGTTACCACCAGTCCATTTTTAGGCGTGTGTTTTTGCATGCGCTAA
AACATTTCGAGAAGTTCTAA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MLGCFSQATNLCTMAQDSLFETPETPGSAGNTSSVSNSKAASKYFHPGGHAPLAARMRPRTLDEVVGQQHLLGEGRPLRR
LIEGSGDASVILYGPPGTGKTTIASLISAAAGDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQ
DALLSAVENRTVLLVAATTENPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAGRITATDEAVDQLVLLAG
GDARRGLTYIEAAAEAVEDGGVLDIDTVMANVNRAVVRYDRDGDQHYDVVSAWIKSIRGSDVDAALHYLARMIDAGEDPR
FIARRLVVHSSEDIGMADPSAMQVAIAAAQAVQLIGMPEARINLAQATIHLALAPKSNAVIMAMDAALTDVQQGHIGTVP
AHLRDGHYEGAKKLGNAVGYSYPHDDPRGVVRQEYLPENLRDRVYYEPTTHGGEKRIAEYIGRLRRIIRGTK

Sequences:

>Translated_472_residues
MLGCFSQATNLCTMAQDSLFETPETPGSAGNTSSVSNSKAASKYFHPGGHAPLAARMRPRTLDEVVGQQHLLGEGRPLRR
LIEGSGDASVILYGPPGTGKTTIASLISAAAGDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQ
DALLSAVENRTVLLVAATTENPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAGRITATDEAVDQLVLLAG
GDARRGLTYIEAAAEAVEDGGVLDIDTVMANVNRAVVRYDRDGDQHYDVVSAWIKSIRGSDVDAALHYLARMIDAGEDPR
FIARRLVVHSSEDIGMADPSAMQVAIAAAQAVQLIGMPEARINLAQATIHLALAPKSNAVIMAMDAALTDVQQGHIGTVP
AHLRDGHYEGAKKLGNAVGYSYPHDDPRGVVRQEYLPENLRDRVYYEPTTHGGEKRIAEYIGRLRRIIRGTK
>Mature_472_residues
MLGCFSQATNLCTMAQDSLFETPETPGSAGNTSSVSNSKAASKYFHPGGHAPLAARMRPRTLDEVVGQQHLLGEGRPLRR
LIEGSGDASVILYGPPGTGKTTIASLISAAAGDRFVAMSALSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQ
DALLSAVENRTVLLVAATTENPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAGRITATDEAVDQLVLLAG
GDARRGLTYIEAAAEAVEDGGVLDIDTVMANVNRAVVRYDRDGDQHYDVVSAWIKSIRGSDVDAALHYLARMIDAGEDPR
FIARRLVVHSSEDIGMADPSAMQVAIAAAQAVQLIGMPEARINLAQATIHLALAPKSNAVIMAMDAALTDVQQGHIGTVP
AHLRDGHYEGAKKLGNAVGYSYPHDDPRGVVRQEYLPENLRDRVYYEPTTHGGEKRIAEYIGRLRRIIRGTK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=40.4545454545455, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.2727272727273, Blast_Score=248, Evalue=1e-65,
Organism=Homo sapiens, GI31563534, Length=316, Percent_Identity=25, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI4506491, Length=221, Percent_Identity=25.7918552036199, Blast_Score=66, Evalue=9e-11,
Organism=Homo sapiens, GI31881687, Length=221, Percent_Identity=25.7918552036199, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1787119, Length=427, Percent_Identity=46.3700234192037, Blast_Score=348, Evalue=5e-97,
Organism=Saccharomyces cerevisiae, GI6324111, Length=436, Percent_Identity=36.9266055045872, Blast_Score=273, Evalue=3e-74,
Organism=Saccharomyces cerevisiae, GI6324039, Length=216, Percent_Identity=25.462962962963, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647857, Length=284, Percent_Identity=25, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI18859927, Length=221, Percent_Identity=25.3393665158371, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 50849; Mature: 50849

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGCFSQATNLCTMAQDSLFETPETPGSAGNTSSVSNSKAASKYFHPGGHAPLAARMRPR
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHCCCCC
TLDEVVGQQHLLGEGRPLRRLIEGSGDASVILYGPPGTGKTTIASLISAAAGDRFVAMSA
HHHHHHCHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHH
LSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRTVLLVAATTE
HHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
NPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAGRITATDEAVDQLVLLAG
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHEEEEEC
GDARRGLTYIEAAAEAVEDGGVLDIDTVMANVNRAVVRYDRDGDQHYDVVSAWIKSIRGS
CCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCC
DVDAALHYLARMIDAGEDPRFIARRLVVHSSEDIGMADPSAMQVAIAAAQAVQLIGMPEA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
RINLAQATIHLALAPKSNAVIMAMDAALTDVQQGHIGTVPAHLRDGHYEGAKKLGNAVGY
HHHHEEEEEEEEECCCCCEEEEEECHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCC
SYPHDDPRGVVRQEYLPENLRDRVYYEPTTHGGEKRIAEYIGRLRRIIRGTK
CCCCCCCCHHHHHHHCCHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLGCFSQATNLCTMAQDSLFETPETPGSAGNTSSVSNSKAASKYFHPGGHAPLAARMRPR
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHCCCCC
TLDEVVGQQHLLGEGRPLRRLIEGSGDASVILYGPPGTGKTTIASLISAAAGDRFVAMSA
HHHHHHCHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHH
LSSGVKEVRAVIERARMDLQLGQRTVLFIDEVHRFSKTQQDALLSAVENRTVLLVAATTE
HHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
NPSFSVVSPLLSRSLLLQLESLSDEDIKTVLNKALEDERGLAGRITATDEAVDQLVLLAG
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHEEEEEC
GDARRGLTYIEAAAEAVEDGGVLDIDTVMANVNRAVVRYDRDGDQHYDVVSAWIKSIRGS
CCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCC
DVDAALHYLARMIDAGEDPRFIARRLVVHSSEDIGMADPSAMQVAIAAAQAVQLIGMPEA
CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH
RINLAQATIHLALAPKSNAVIMAMDAALTDVQQGHIGTVPAHLRDGHYEGAKKLGNAVGY
HHHHEEEEEEEEECCCCCEEEEEECHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHCCC
SYPHDDPRGVVRQEYLPENLRDRVYYEPTTHGGEKRIAEYIGRLRRIIRGTK
CCCCCCCCHHHHHHHCCHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]