| Definition | Corynebacterium glutamicum R chromosome, complete genome. |
|---|---|
| Accession | NC_009342 |
| Length | 3,314,179 |
Click here to switch to the map view.
The map label for this gene is helD [H]
Identifier: 145295509
GI number: 145295509
Start: 1585112
End: 1587463
Strand: Reverse
Name: helD [H]
Synonym: cgR_1437
Alternate gene names: 145295509
Gene position: 1587463-1585112 (Counterclockwise)
Preceding gene: 145295510
Following gene: 145295507
Centisome position: 47.9
GC content: 54.72
Gene sequence:
>2352_bases TTGATAGCTTCCAAGTGTTGTATCTATTCCAGTTCAAACACTTTTTCTCACTGCTCCACATCAGGAAACAGGAGGTCTCC CGGAGTGACCACCATTCGGCAATCTGATTCAGAATCAGATGTCCATAACGCCCTCACCACAGCAATTAGCCAAGAACAGG CTTATGTTGATGTACTTTTCGGTCGCCTCGATGATGAGGTAGCCAGGTCTAATCAGCGTCTTTCTGAGGTGATGAAAGAC GTCGACCCCTCAAACCCTGATCCGGAAGCACTTGTTCGTCGTGAAACTGAGTATCACGGCCTGAATGAGAAGTTGGACCG GCTTAATTTGGCTCAACTCGGGTTGGTCTTCGGTCGAATCGATGTGGAGTCTGAAGCTGAGGACGCTGAGAACCCAGTCC CGGGCCACCCTGATTTGGATCGTCGTTATATCGGTCGCATGGGTCTTGATGTGCGTGAAGATAATTACCGCACGTTGCTG TTGGATTGGCGCTCCCCCATGGCGCGCCCGTTTTATCTGGCTACCACCGTTTCACCGGAGGGCGTGCATATCCGCCGGCA CATTCGCACCCGTGGGCGCGTTGTCACGGGTGTTGATGATGAGGTATTGACCGGTGAGATGGCCGATGTTATCGAGCAGG GTGGTGTCGGCTCTGAATCTGTGCTGCACCAGGCGTTGGAACAGGCCCGCAGCGGCCACATGCGCAACATCGTTGAAACA ATTCAGCGCGAGCAGGATGAGATCATCCGCGATACCACCCGCGGTGTCATGGTTGTTCAAGGTGGCCCTGGAACAGGTAA AACTGCGGTCGCGTTGCACCGTGTGGCTTATCTGCTTTATACCTGGCGCGATCAGCTGGCTAAGTCCGGCGTGTTGATCA TTGGCCCGAACAAGACATTTTTGGAGTATATTTCTCACGTTTTGCCTGAACTCGGCGAGACTGGCGTGGTGTTGTCCACC GTCGGTGAGCTGTTCCCCGGTATCGTCCCAACGGGTTCCGAGGACACTTTGACCAGGGAAATTAAGGGCAGCGAGGAAAT GGCCAGCATTTTGGCCGAGGCAGTCAAGGCGTATCAAGTGCTGCCAGAGAAGACCATCGTGGTCTCTGTTGATGGCATCG AGATTTCCATTGATGAGAAAACGGTGGCAAAATCCCGCACCCGAGCTCGTCGTGCCAGGCAGTCGCACAATTCTGCACGC CCAATTTTCCGCGAGCATTTAGTCGAACAACTCGCGCACCAAATGGCTCAAACGATCGGCGCGGATCCGCTGGGCGGCAA AAACCTGCTGTCAGCCGCCGACATCGATCAGCTGCACGATGATTTGCTTGACGACGCGGCCCTCCAGTCCGTCATCGACG ATTTCTGGCCGGAGCTCCGGCCTCAGGACGTCCTGCATGATCTGTTGATTTCCGAAGAGCGCATTAATGTTGCTGCCGCG GGGTATGACGAGGAAACTAAGTCTGCTTTGCTGCGTGGTGAACTCGATCCGTGGGCACCATCGGACGCTGCATTGCTTGA TGAGTTAGCCCTGCTCATCGGTCTTCCCGATCCAGAGGAGGCACGGGAGAAGGCTGAGGCCAAATGGCGCGAGCAGATCG ATGACGCTCAGGAAGTCCTGGACGTTCTTAGTTCATCACAGTCATCGGATATTGATGATGTGACGGAAGCTGAAGTTCTC TCCGCTTTCGACGTCATCGATGCGGAAACTTTGGCACAACGCCAAACTGTCACGGATAATCGCACCACTGCGGAACGTGC ACAGGCGGATCATAAGTGGGCGTATGGTCACGTGATTGTAGATGAAGCTCAGGAGCTCAGTCCGATGGAATGGCGCATGG TGTTTCGCCGTAGCCCTTCGCGATGGATGACCCTTGTGGGCGATATTGCTCAAACTGGTTCGCCTGCCGGCGTTGACGAT TGGGCAGAATCACTGTGGCCCTTCGTCGAAAAGCGTTTCAGGCACCACGAGCTCACCGTTAACTACCGCACCCCGGCCGA GATCATGTCGGTGGCCAATGAGCTTTTGACGCAGATCAATCCTGATATTGCGCCGGCAATGGCGATCCGCGAATCTGGTC GAGAAGTAGTGAACTTGCCGCTTGATGCCGATTTGTCGGCAGTGATGGATAGTTTGCGTGAGGAGGATTCACAGCGCACC ATCGCGGTGATTTCTTCGCGCCGCCACCACGAAAGCGATTTCTACCTGGTCGATGACATCAAGGGCTTAGAGTTTGACCA CGTCATCGTGGTGGATCCTGCGGGAATCGTTGAAGAATCCCCCCAGGGATTGCAAGACCTCTACGTTGCGGTCACTCGTG CAACGCAGAGCCTCACCATTTTAGGTGAGTAG
Upstream 100 bases:
>100_bases CTGATTGAGAAAAAATTTCCGCCACGTTATCCCTGGAATTGCCGGGGTAACGTGGCGGTTTTTCACCCATTGTTCCCGCT TTAACCGCTATCTGGAATGA
Downstream 100 bases:
>100_bases CAGGTTATGAGCTCAGGGCCTCAACGATTGAGGTGCTTGGGCGTCCGATGAGATCCTGCAGGTCGGTGCTGTCGGAGTAC AGCGCGCCCTCTGCAATGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MIASKCCIYSSSNTFSHCSTSGNRRSPGVTTIRQSDSESDVHNALTTAISQEQAYVDVLFGRLDDEVARSNQRLSEVMKD VDPSNPDPEALVRRETEYHGLNEKLDRLNLAQLGLVFGRIDVESEAEDAENPVPGHPDLDRRYIGRMGLDVREDNYRTLL LDWRSPMARPFYLATTVSPEGVHIRRHIRTRGRVVTGVDDEVLTGEMADVIEQGGVGSESVLHQALEQARSGHMRNIVET IQREQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLLYTWRDQLAKSGVLIIGPNKTFLEYISHVLPELGETGVVLST VGELFPGIVPTGSEDTLTREIKGSEEMASILAEAVKAYQVLPEKTIVVSVDGIEISIDEKTVAKSRTRARRARQSHNSAR PIFREHLVEQLAHQMAQTIGADPLGGKNLLSAADIDQLHDDLLDDAALQSVIDDFWPELRPQDVLHDLLISEERINVAAA GYDEETKSALLRGELDPWAPSDAALLDELALLIGLPDPEEAREKAEAKWREQIDDAQEVLDVLSSSQSSDIDDVTEAEVL SAFDVIDAETLAQRQTVTDNRTTAERAQADHKWAYGHVIVDEAQELSPMEWRMVFRRSPSRWMTLVGDIAQTGSPAGVDD WAESLWPFVEKRFRHHELTVNYRTPAEIMSVANELLTQINPDIAPAMAIRESGREVVNLPLDADLSAVMDSLREEDSQRT IAVISSRRHHESDFYLVDDIKGLEFDHVIVVDPAGIVEESPQGLQDLYVAVTRATQSLTILGE
Sequences:
>Translated_783_residues MIASKCCIYSSSNTFSHCSTSGNRRSPGVTTIRQSDSESDVHNALTTAISQEQAYVDVLFGRLDDEVARSNQRLSEVMKD VDPSNPDPEALVRRETEYHGLNEKLDRLNLAQLGLVFGRIDVESEAEDAENPVPGHPDLDRRYIGRMGLDVREDNYRTLL LDWRSPMARPFYLATTVSPEGVHIRRHIRTRGRVVTGVDDEVLTGEMADVIEQGGVGSESVLHQALEQARSGHMRNIVET IQREQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLLYTWRDQLAKSGVLIIGPNKTFLEYISHVLPELGETGVVLST VGELFPGIVPTGSEDTLTREIKGSEEMASILAEAVKAYQVLPEKTIVVSVDGIEISIDEKTVAKSRTRARRARQSHNSAR PIFREHLVEQLAHQMAQTIGADPLGGKNLLSAADIDQLHDDLLDDAALQSVIDDFWPELRPQDVLHDLLISEERINVAAA GYDEETKSALLRGELDPWAPSDAALLDELALLIGLPDPEEAREKAEAKWREQIDDAQEVLDVLSSSQSSDIDDVTEAEVL SAFDVIDAETLAQRQTVTDNRTTAERAQADHKWAYGHVIVDEAQELSPMEWRMVFRRSPSRWMTLVGDIAQTGSPAGVDD WAESLWPFVEKRFRHHELTVNYRTPAEIMSVANELLTQINPDIAPAMAIRESGREVVNLPLDADLSAVMDSLREEDSQRT IAVISSRRHHESDFYLVDDIKGLEFDHVIVVDPAGIVEESPQGLQDLYVAVTRATQSLTILGE >Mature_783_residues MIASKCCIYSSSNTFSHCSTSGNRRSPGVTTIRQSDSESDVHNALTTAISQEQAYVDVLFGRLDDEVARSNQRLSEVMKD VDPSNPDPEALVRRETEYHGLNEKLDRLNLAQLGLVFGRIDVESEAEDAENPVPGHPDLDRRYIGRMGLDVREDNYRTLL LDWRSPMARPFYLATTVSPEGVHIRRHIRTRGRVVTGVDDEVLTGEMADVIEQGGVGSESVLHQALEQARSGHMRNIVET IQREQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLLYTWRDQLAKSGVLIIGPNKTFLEYISHVLPELGETGVVLST VGELFPGIVPTGSEDTLTREIKGSEEMASILAEAVKAYQVLPEKTIVVSVDGIEISIDEKTVAKSRTRARRARQSHNSAR PIFREHLVEQLAHQMAQTIGADPLGGKNLLSAADIDQLHDDLLDDAALQSVIDDFWPELRPQDVLHDLLISEERINVAAA GYDEETKSALLRGELDPWAPSDAALLDELALLIGLPDPEEAREKAEAKWREQIDDAQEVLDVLSSSQSSDIDDVTEAEVL SAFDVIDAETLAQRQTVTDNRTTAERAQADHKWAYGHVIVDEAQELSPMEWRMVFRRSPSRWMTLVGDIAQTGSPAGVDD WAESLWPFVEKRFRHHELTVNYRTPAEIMSVANELLTQINPDIAPAMAIRESGREVVNLPLDADLSAVMDSLREEDSQRT IAVISSRRHHESDFYLVDDIKGLEFDHVIVVDPAGIVEESPQGLQDLYVAVTRATQSLTILGE
Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]
COG id: COG3973
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 86916; Mature: 86916
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIASKCCIYSSSNTFSHCSTSGNRRSPGVTTIRQSDSESDVHNALTTAISQEQAYVDVLF CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH GRLDDEVARSNQRLSEVMKDVDPSNPDPEALVRRETEYHGLNEKLDRLNLAQLGLVFGRI HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC DVESEAEDAENPVPGHPDLDRRYIGRMGLDVREDNYRTLLLDWRSPMARPFYLATTVSPE CCCCCHHCCCCCCCCCCCHHHHHHHHCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCC GVHIRRHIRTRGRVVTGVDDEVLTGEMADVIEQGGVGSESVLHQALEQARSGHMRNIVET CHHHHHHHHHCCCEEECCCCHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHH IQREQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLLYTWRDQLAKSGVLIIGPNKTF HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHH LEYISHVLPELGETGVVLSTVGELFPGIVPTGSEDTLTREIKGSEEMASILAEAVKAYQV HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH LPEKTIVVSVDGIEISIDEKTVAKSRTRARRARQSHNSARPIFREHLVEQLAHQMAQTIG CCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC ADPLGGKNLLSAADIDQLHDDLLDDAALQSVIDDFWPELRPQDVLHDLLISEERINVAAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEC GYDEETKSALLRGELDPWAPSDAALLDELALLIGLPDPEEAREKAEAKWREQIDDAQEVL CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH DVLSSSQSSDIDDVTEAEVLSAFDVIDAETLAQRQTVTDNRTTAERAQADHKWAYGHVIV HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECEEEE DEAQELSPMEWRMVFRRSPSRWMTLVGDIAQTGSPAGVDDWAESLWPFVEKRFRHHELTV CCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEE NYRTPAEIMSVANELLTQINPDIAPAMAIRESGREVVNLPLDADLSAVMDSLREEDSQRT ECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCHH IAVISSRRHHESDFYLVDDIKGLEFDHVIVVDPAGIVEESPQGLQDLYVAVTRATQSLTI HHHHHCCCCCCCCCEEEECCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHCCEEE LGE ECC >Mature Secondary Structure MIASKCCIYSSSNTFSHCSTSGNRRSPGVTTIRQSDSESDVHNALTTAISQEQAYVDVLF CCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH GRLDDEVARSNQRLSEVMKDVDPSNPDPEALVRRETEYHGLNEKLDRLNLAQLGLVFGRI HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC DVESEAEDAENPVPGHPDLDRRYIGRMGLDVREDNYRTLLLDWRSPMARPFYLATTVSPE CCCCCHHCCCCCCCCCCCHHHHHHHHCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCC GVHIRRHIRTRGRVVTGVDDEVLTGEMADVIEQGGVGSESVLHQALEQARSGHMRNIVET CHHHHHHHHHCCCEEECCCCHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHH IQREQDEIIRDTTRGVMVVQGGPGTGKTAVALHRVAYLLYTWRDQLAKSGVLIIGPNKTF HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHH LEYISHVLPELGETGVVLSTVGELFPGIVPTGSEDTLTREIKGSEEMASILAEAVKAYQV HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH LPEKTIVVSVDGIEISIDEKTVAKSRTRARRARQSHNSARPIFREHLVEQLAHQMAQTIG CCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC ADPLGGKNLLSAADIDQLHDDLLDDAALQSVIDDFWPELRPQDVLHDLLISEERINVAAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEEEEC GYDEETKSALLRGELDPWAPSDAALLDELALLIGLPDPEEAREKAEAKWREQIDDAQEVL CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH DVLSSSQSSDIDDVTEAEVLSAFDVIDAETLAQRQTVTDNRTTAERAQADHKWAYGHVIV HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECEEEE DEAQELSPMEWRMVFRRSPSRWMTLVGDIAQTGSPAGVDDWAESLWPFVEKRFRHHELTV CCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEE NYRTPAEIMSVANELLTQINPDIAPAMAIRESGREVVNLPLDADLSAVMDSLREEDSQRT ECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCHH IAVISSRRHHESDFYLVDDIKGLEFDHVIVVDPAGIVEESPQGLQDLYVAVTRATQSLTI HHHHHCCCCCCCCCEEEECCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHCCEEE LGE ECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]