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The map label for this gene is cydA [H]

Identifier: 145295293

GI number: 145295293

Start: 1344699

End: 1346240

Strand: Reverse

Name: cydA [H]

Synonym: cgR_1233

Alternate gene names: 145295293

Gene position: 1346240-1344699 (Counterclockwise)

Preceding gene: 145295294

Following gene: 145295292

Centisome position: 40.62

GC content: 53.37

Gene sequence:

>1542_bases
GTGGATGTCGTTGACATCGCGCGGTGGCAATTCGGAATTACCACCGTCTATCACTTCATTTTTGTCCCACTGACCATTGG
CTTAGCGCCGTTGGTCGCGATCATGCAAACGTTTTGGCAAGTTACCGGCAAAGAGCACTGGTATCGGGCCACAAGATTTT
TTGGCACTGTGCTGCTCATCAACTTCGCGGTTGGTGTAGCAACAGGCATTGTGCAGGAGTTCCAGTTCGGTATGAACTGG
TCCGAGTACTCGCGTTTCGTCGGTGATGTTTTCGGCGGACCGCTGGCTTTGGAGGGGCTCATCGCGTTCTTCCTTGAGTC
TGTGTTCTTAGGTCTGTGGATTTTCGGATGGGGGAAGATTCCCGGGTGGCTGCACACTGCGTCCATTTGGATCGTTGCTA
TTGCGACGAATATTTCTGCCTATTTCATCATCGTGGCCAACTCGTTTATGCAGCATCCGGTGGGTGCGGAGTATAACCCT
GAGACTGGTCGTGCGGAGCTTACTGATTTCTGGGCTCTTCTCACTAATTCCACCGCGCTGGCTGCGTTCCCGCATGCTGT
TGCCGGTGGTTTTTTAACAGCTGGAACTTTCGTCCTCGGAATTTCGGGTTGGTGGATTATTCGTGCGCACCGTCAGGCCA
AGAAGGCTGAGGCGGAAATCGAGTCGAAGCATTCGATGCACAGGCCGGCGTTGTGGGTTGGTTGGTGGACCACAGTTGTC
TCTTCCGTGGCACTGTTCATCACTGGCGATACACAGGCGAAGCTCATGTTCGTGCAGCAGCCGATGAAGATGGCGTCGGC
GGAATCCTTGTGTGAAACCGCCACAGATCCAAACTTCTCCATTCTGACAATTGGTACGCACAACAACTGCGATACGGTAA
CCCACTTGATCGATGTTCCGTTTGTGCTTCCATTCTTGGCTGAAGGAAAATTCACCGGTGTGACTTTGCAGGGTGTAAAC
CAGCTCCAAGCTGCAGCGGAGCAAGCATACGGTCCTGGCAACTACTCCCCTAACTTGTTTGTCACCTACTGGTCATTCCG
CGCAATGATCGGCCTAATGCTTGGTTCTTTGGCTATCGCTGTGATTGCGTGGCTGTTGCTGCGTAAGAAGCGCACACCAA
CTGGAAAGATTGCTCGTCTGTTCCAGATCGGCAGCCTCATTGCCATTCCGTTCCCATTCTTGGCTAACTCTGCTGGTTGG
ATCTTCACCGAGATGGGCCGCCAGCCATGGGTGGTGCACCCGAACCCTGAATCTGCCGGCGATGCCCGAACAGAGATGAT
CCGGATGACTGTTGATATGGGTGTATCTGATCATGCGCCGTGGCAAGTCTGGCTGACTCTCATTGGCTTCACGATTCTCT
ATCTCATTTTGTTCGTGGTGTGGGTGTGGCTGATTCGCCGCGCAGTTCTGATCGGGCCACCAGAGGAAGGCGCCCCATCC
GTAAAGGCAAAGACTGGACCAGCAACCCCAATTGGTTCGGATATGCCCATGACACCGCTGCAATTTACAGCTTCCGCCCC
AACCACAGGTGAAAAGGAATAA

Upstream 100 bases:

>100_bases
TCTTATTGGTTCTTCGTTTTGTATCGATAAATGCAATCGATTTCCTGGCTTAATAAGGCTGTTCCTGTAAACCTGCAATG
GAAGAGGAAGGGGACCTAGC

Downstream 100 bases:

>100_bases
CCATGGATCTCAATACCTTTTGGTTTATTCTCATCGCATTTCTATTCTCCGGATATTTTCTCCTTGAAGGATTCGACTTC
GGTGTCGGAATTTTAGCACC

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLINFAVGVATGIVQEFQFGMNW
SEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKIPGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNP
ETGRAELTDFWALLTNSTALAAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV
SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVPFVLPFLAEGKFTGVTLQGVN
QLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIAVIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGW
IFTEMGRQPWVVHPNPESAGDARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
VKAKTGPATPIGSDMPMTPLQFTASAPTTGEKE

Sequences:

>Translated_513_residues
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLINFAVGVATGIVQEFQFGMNW
SEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKIPGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNP
ETGRAELTDFWALLTNSTALAAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV
SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVPFVLPFLAEGKFTGVTLQGVN
QLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIAVIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGW
IFTEMGRQPWVVHPNPESAGDARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
VKAKTGPATPIGSDMPMTPLQFTASAPTTGEKE
>Mature_513_residues
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLINFAVGVATGIVQEFQFGMNW
SEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKIPGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNP
ETGRAELTDFWALLTNSTALAAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV
SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVPFVLPFLAEGKFTGVTLQGVN
QLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIAVIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGW
IFTEMGRQPWVVHPNPESAGDARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
VKAKTGPATPIGSDMPMTPLQFTASAPTTGEKE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=472, Percent_Identity=33.8983050847458, Blast_Score=252, Evalue=5e-68,
Organism=Escherichia coli, GI1787212, Length=529, Percent_Identity=32.703213610586, Blast_Score=248, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 56580; Mature: 56580

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL
CCHHHHHHEEEEEEECCCCEEEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV
HHCCHHHHCCHHHHHHHEEECCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHH
SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP
HCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA
HHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
VIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG
HHHHHHHHHCCCCHHHHHHHHHHCCHHEECCHHHCCCCCCEEECCCCCCEEECCCCCCCC
DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
CHHHHHEEEHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
VKAKTGPATPIGSDMPMTPLQFTASAPTTGEKE
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MDVVDIARWQFGITTVYHFIFVPLTIGLAPLVAIMQTFWQVTGKEHWYRATRFFGTVLLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NFAVGVATGIVQEFQFGMNWSEYSRFVGDVFGGPLALEGLIAFFLESVFLGLWIFGWGKI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGWLHTASIWIVAIATNISAYFIIVANSFMQHPVGAEYNPETGRAELTDFWALLTNSTAL
CCHHHHHHEEEEEEECCCCEEEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AAFPHAVAGGFLTAGTFVLGISGWWIIRAHRQAKKAEAEIESKHSMHRPALWVGWWTTVV
HHCCHHHHCCHHHHHHHEEECCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHH
SSVALFITGDTQAKLMFVQQPMKMASAESLCETATDPNFSILTIGTHNNCDTVTHLIDVP
HCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHH
FVLPFLAEGKFTGVTLQGVNQLQAAAEQAYGPGNYSPNLFVTYWSFRAMIGLMLGSLAIA
HHHHHHCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
VIAWLLLRKKRTPTGKIARLFQIGSLIAIPFPFLANSAGWIFTEMGRQPWVVHPNPESAG
HHHHHHHHHCCCCHHHHHHHHHHCCHHEECCHHHCCCCCCEEECCCCCCEEECCCCCCCC
DARTEMIRMTVDMGVSDHAPWQVWLTLIGFTILYLILFVVWVWLIRRAVLIGPPEEGAPS
CHHHHHEEEHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
VKAKTGPATPIGSDMPMTPLQFTASAPTTGEKE
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]