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The map label for this gene is ykoC [H]

Identifier: 145295222

GI number: 145295222

Start: 1270817

End: 1271572

Strand: Direct

Name: ykoC [H]

Synonym: cgR_1163

Alternate gene names: 145295222

Gene position: 1270817-1271572 (Clockwise)

Preceding gene: 145295221

Following gene: 145295223

Centisome position: 38.34

GC content: 55.82

Gene sequence:

>756_bases
GTGAACCTGCTGAGCAAAATTAATCCCGTCACCCGCATCATCGCGTTGATGGTACTGACCACGCCGTTGCTGCTGAGTTT
GGATGTGATGTCGGCAGCGATCGCGCTGGTGGCAACCATTATTCTGGCACCATTTGCCGGCGTGACCTGGAAGATGCTGC
TGAAACGTGGCTGGATGCTGTTCCTCATGGCACCGGTGGCTGCATTATCCATGGCGCTTTATGGCAGGCCGGATGGAAAA
GAGTACTTTAGCTTCCTGCTCATTCACGTCACTGATAATTCACTGGCTTTGGCTGCTGCCATTGGGCTGCGTGTTCTGGC
GATTGGTCTGCCCGTTGTGGTGCTGATTGCTCGCATTGATCCCACCGACCTGGGCGATGGTTTGGCGCAGCTGCTGAAAC
TGCCTGAGAGGTTTGTCATCGGTGCTGTGGCAGGAAGCCGACTGATGACGCTTTTTCGGGAAGATTGGTACTCCATGTCC
AGGGCAAGGCGTGCCCGCGGAATTGCTGATCAGGGCAAGATCAAGCACTTTTTCACCATGACTTTTGGTTTGTTGGTGCT
CTCGCTTCGCCGTGGATCCAAGCTTGCAACGGCGATGGAAGCACGCGGTTTTGGTCGCACGACTGGCCGCACCTGGGCAA
GGGAATCCACCGTCGGCGCGCGCGATCTGGTGCTGATCTTGGTGTGTGCTGCCATTTCCGCGATCGCCCTCACGGTGTCC
ATTCAGACTGGTTTCTTTAAGTTCTTGGGCACATGA

Upstream 100 bases:

>100_bases
TGCGTGAATTAACAGACAACGGAATCAGCATTGTGTCAGTAACCCATGATCCTGATTTCATCGCAGCGCTGGGCGATCAC
CATATTGAGGTGAGCGCGAA

Downstream 100 bases:

>100_bases
TCACAGTTTTAATTGATGGACAATCCGGTGCGGGCAAAACCACCTTGGCGGGTGAGTTAGCTGCCCGCACCGGGTTTCAG
TTGGTTCATTTGGATGACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNLLSKINPVTRIIALMVLTTPLLLSLDVMSAAIALVATIILAPFAGVTWKMLLKRGWMLFLMAPVAALSMALYGRPDGK
EYFSFLLIHVTDNSLALAAAIGLRVLAIGLPVVVLIARIDPTDLGDGLAQLLKLPERFVIGAVAGSRLMTLFREDWYSMS
RARRARGIADQGKIKHFFTMTFGLLVLSLRRGSKLATAMEARGFGRTTGRTWARESTVGARDLVLILVCAAISAIALTVS
IQTGFFKFLGT

Sequences:

>Translated_251_residues
MNLLSKINPVTRIIALMVLTTPLLLSLDVMSAAIALVATIILAPFAGVTWKMLLKRGWMLFLMAPVAALSMALYGRPDGK
EYFSFLLIHVTDNSLALAAAIGLRVLAIGLPVVVLIARIDPTDLGDGLAQLLKLPERFVIGAVAGSRLMTLFREDWYSMS
RARRARGIADQGKIKHFFTMTFGLLVLSLRRGSKLATAMEARGFGRTTGRTWARESTVGARDLVLILVCAAISAIALTVS
IQTGFFKFLGT
>Mature_251_residues
MNLLSKINPVTRIIALMVLTTPLLLSLDVMSAAIALVATIILAPFAGVTWKMLLKRGWMLFLMAPVAALSMALYGRPDGK
EYFSFLLIHVTDNSLALAAAIGLRVLAIGLPVVVLIARIDPTDLGDGLAQLLKLPERFVIGAVAGSRLMTLFREDWYSMS
RARRARGIADQGKIKHFFTMTFGLLVLSLRRGSKLATAMEARGFGRTTGRTWARESTVGARDLVLILVCAAISAIALTVS
IQTGFFKFLGT

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 27208; Mature: 27208

Theoretical pI: Translated: 11.48; Mature: 11.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLSKINPVTRIIALMVLTTPLLLSLDVMSAAIALVATIILAPFAGVTWKMLLKRGWML
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
FLMAPVAALSMALYGRPDGKEYFSFLLIHVTDNSLALAAAIGLRVLAIGLPVVVLIARID
HHHHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PTDLGDGLAQLLKLPERFVIGAVAGSRLMTLFREDWYSMSRARRARGIADQGKIKHFFTM
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TFGLLVLSLRRGSKLATAMEARGFGRTTGRTWARESTVGARDLVLILVCAAISAIALTVS
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHEE
IQTGFFKFLGT
HHHHHHHHHCC
>Mature Secondary Structure
MNLLSKINPVTRIIALMVLTTPLLLSLDVMSAAIALVATIILAPFAGVTWKMLLKRGWML
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH
FLMAPVAALSMALYGRPDGKEYFSFLLIHVTDNSLALAAAIGLRVLAIGLPVVVLIARID
HHHHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PTDLGDGLAQLLKLPERFVIGAVAGSRLMTLFREDWYSMSRARRARGIADQGKIKHFFTM
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
TFGLLVLSLRRGSKLATAMEARGFGRTTGRTWARESTVGARDLVLILVCAAISAIALTVS
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHEE
IQTGFFKFLGT
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]