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The map label for this gene is ydiF [H]

Identifier: 145295204

GI number: 145295204

Start: 1254288

End: 1255346

Strand: Direct

Name: ydiF [H]

Synonym: cgR_1145

Alternate gene names: 145295204

Gene position: 1254288-1255346 (Clockwise)

Preceding gene: 145295203

Following gene: 145295206

Centisome position: 37.85

GC content: 53.45

Gene sequence:

>1059_bases
TTGAGCAACTGGAGAAATTTGTTCAGGGGGCTTCGCGGGGGAGTCGTACTGGTCAGCCATGATCGTGAGTTTCTTTCCAG
GTGTGTGACCACTGTGCTGGAACTCGATCTGCACCAAAATTCCCACCATGTTTATGGCGGTGGATATGATTCCTACCTTG
AGGAACGCGCAGTGCTACGCCAGCACGCCCGTGACCAATATGAGGAATTTGCGGAAAAGAAGAAGGACCTTGTGGCACGT
GCTCGAACGCAGCGTGAATGGTCTAGCCACGGTATCCGCAATGCTATTAAACGTGCACCTGACAACGACAAACTTCGGAA
GAAAGCCGCTGCGGAATCCAGTGAAAAGCAGGCTCAAAAAGTCCGCCAGATGGAAAGCCGCATCGCTCGGTTAGAAGAAG
TTGAAGAGCCACGTAAAGAATGGAAACTGCAATTCAGCGTCGGTAAGGCGTCGCGGTCAAGTTCTGTTGTTTCCACGTTG
AATGATGCAAGCTTCACCCAAGGCGATTTCACCTTGGGACCAGTATCCATCCAAGTAAATGCTGGCGATCGCATTGGCAT
CACAGGACCCAACGGTGCTGGTAAATCCACATTGCTGCGCGGACTATTGGGAAACCAAGAACCCACCAGCGGTACTGCCA
CTATGGGCACGAGCGTGGCGATCGGAGAAATCGATCAGGCACGAGCGTTACTTGATCCACAGTTGCCACTGATTTCTGCG
TTTGAAAAGCATGTTCCAGACTTACCGATCAGTGAGGTGCGCACACTGCTCGCGAAATTTGGGCTGAATGATAATCATGT
GGAACGGGACGTCGAAAAGCTATCTCCTGGCGAGCGCACGCGCGCCGGACTTGCGCTGCTACAGGTGCGGGGCGTCAACG
TGCTTGTTCTTGATGAGCCCACCAACCACCTTGACCTGGAGGCCATCGAGCAATTGGAGCAAGCGTTGGCCTCGTATGAT
GGTGTGTTGCTGCTGGTCACGCACGATCGTCGCATGCTGGACGCTGTGCAGACCAATCGTCGTTGGCATGTCGAGGCCGG
CGAAGTTAGGGAGTTATAA

Upstream 100 bases:

>100_bases
GGCGGGCAGGCAGCCCGGGTCGGGCTGGCGGCGTTACTGTTGTCACGTTTTGACATTGTGCTTCTCGACGAGCCCACCAA
CGATTTGGATCTCGACGGTC

Downstream 100 bases:

>100_bases
CCGTTTCCGTATTGATGCCATGGTGAATTGATCGCTTCACAGCGCACAAGCGATCAATTTTCTTGGCGGCGCTGGCAATA
AGTTTGTCCTGCGCCTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSNWRNLFRGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVYGGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVAR
ARTQREWSSHGIRNAIKRAPDNDKLRKKAAAESSEKQAQKVRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTL
NDASFTQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEIDQARALLDPQLPLISA
FEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLALLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYD
GVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL

Sequences:

>Translated_352_residues
MSNWRNLFRGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVYGGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVAR
ARTQREWSSHGIRNAIKRAPDNDKLRKKAAAESSEKQAQKVRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTL
NDASFTQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEIDQARALLDPQLPLISA
FEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLALLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYD
GVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL
>Mature_351_residues
SNWRNLFRGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVYGGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVARA
RTQREWSSHGIRNAIKRAPDNDKLRKKAAAESSEKQAQKVRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLN
DASFTQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEIDQARALLDPQLPLISAF
EKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLALLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYDG
VLLLVTHDRRMLDAVQTNRRWHVEAGEVREL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=343, Percent_Identity=27.6967930029155, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI10947137, Length=327, Percent_Identity=29.6636085626911, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI27881506, Length=327, Percent_Identity=29.6636085626911, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI10947135, Length=352, Percent_Identity=29.8295454545455, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI69354671, Length=352, Percent_Identity=29.8295454545455, Blast_Score=108, Evalue=6e-24,
Organism=Escherichia coli, GI1787182, Length=348, Percent_Identity=31.8965517241379, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789751, Length=337, Percent_Identity=30.2670623145401, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI2367384, Length=351, Percent_Identity=29.6296296296296, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787041, Length=333, Percent_Identity=28.8288288288288, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788165, Length=192, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=350, Percent_Identity=28, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17555318, Length=333, Percent_Identity=29.4294294294294, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17553372, Length=339, Percent_Identity=28.3185840707965, Blast_Score=112, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6321121, Length=345, Percent_Identity=27.2463768115942, Blast_Score=119, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6320874, Length=351, Percent_Identity=28.7749287749288, Blast_Score=116, Evalue=6e-27,
Organism=Saccharomyces cerevisiae, GI6324314, Length=166, Percent_Identity=30.7228915662651, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6325030, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323278, Length=154, Percent_Identity=32.4675324675325, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641342, Length=338, Percent_Identity=27.810650887574, Blast_Score=127, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24642252, Length=325, Percent_Identity=27.3846153846154, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI18859989, Length=325, Percent_Identity=27.3846153846154, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24666836, Length=327, Percent_Identity=27.5229357798165, Blast_Score=112, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 39274; Mature: 39143

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNWRNLFRGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVYGGGYDSYLEERAVLR
CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHH
QHARDQYEEFAEKKKDLVARARTQREWSSHGIRNAIKRAPDNDKLRKKAAAESSEKQAQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHH
VRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASFTQGDFTLGPVSIQVN
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCEEECCEEEEEE
AGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEIDQARALLDPQLPLISA
CCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCHHHHH
FEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLALLQVRGVNVLVLDEP
HHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHEEECCCEEEEECCC
TNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL
CCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEECCCCCCCC
>Mature Secondary Structure 
SNWRNLFRGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVYGGGYDSYLEERAVLR
CHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHH
QHARDQYEEFAEKKKDLVARARTQREWSSHGIRNAIKRAPDNDKLRKKAAAESSEKQAQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHH
VRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASFTQGDFTLGPVSIQVN
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCEEECCEEEEEE
AGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEIDQARALLDPQLPLISA
CCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCHHHHH
FEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLALLQVRGVNVLVLDEP
HHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHEEECCCEEEEECCC
TNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL
CCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]