The gene/protein map for NC_009342 is currently unavailable.
Definition Corynebacterium glutamicum R chromosome, complete genome.
Accession NC_009342
Length 3,314,179

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The map label for this gene is vdlC [H]

Identifier: 145295174

GI number: 145295174

Start: 1228024

End: 1228857

Strand: Reverse

Name: vdlC [H]

Synonym: cgR_1116

Alternate gene names: 145295174

Gene position: 1228857-1228024 (Counterclockwise)

Preceding gene: 145295186

Following gene: 145295172

Centisome position: 37.08

GC content: 61.99

Gene sequence:

>834_bases
ATGCCCACCAAAGTCGCCCTCGTCACCGGAGCCTCCTCCGGAATCGGCGAATCCACCGCCCGCAAACTGCAGTCACTCGG
CTTCACCGTCTACGGCGCTACCCGTAGGACAGAGCGCCTCCAAAAGCTCGCTTCAGACGGGATCCACCCCCTCGAGATGG
ACGTCACCGACGACGAATCGATGAAGGCCAGGATCGCGAAAATCCTCGCCGACTCCGGACGTATCGACGTCCTCGTCAAC
AACGCCGGCTACGGCTCGTACGGGGCAATCGAAGACGTCTCGATCGATGAAGGCGGTCGCCAGTTCGAGGTCAATGTATT
CGGCGCGATGGCCCTCACCCGACTCGTCCTCCCCCACATGCGGAAGCAAAAGTCGGGAACGATCGTGAACATCACATCGA
TGGGCGGGAAGATCTACACGCCTCTCGGCGGCTGGTATCACGGCACCAAGTTCGCCCTCGAGGCCCTCTCGGACGCCCTC
CGCCTGGAGGTCGCCCAGTTCGGCATCGACGTTGTTGTCATCGAACCGGGCGGCATCGCCACCGAGTGGGGAGGAATCGC
TGCCGACAATCTCGACGCAGTGTCGAAAGACAGCGCATACAAGCGCCAGGCTGACGCAGTATCGAAGTCGTTGCGATCTG
AGGCGAACAGCAACCGCAACTCACCACCGTCAGTTGTCGCCGATGCGATTGGAAAGGCCGTGACGGCACGTCACCCCAAG
ACCCGCTATGCCATCGGCTTCGGTGCCAAACCGCTGATTGCCGCGCGCAACATCCTCACTGATCGCCAGTTCGACGCAGT
GATCACTCGAGCGACTGGCGTCCCCCGCGACTGA

Upstream 100 bases:

>100_bases
GCTTGTTAGTCGACATCGCTAGTACCTCCATCCGTAAACGACGGATTCTGCTTTTTGCATAAACATGAACCAATATTCAC
TTTGCTATGGGAGCACAATC

Downstream 100 bases:

>100_bases
CCACTCTTCTGCGCCCGTCACACGTTGAACTTGAACTCCACAACGTCGCCATCAACCATCACGTAGTCCTTGCCTTCTTG
GCGGACTTTACCCTGGGCCT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPTKVALVTGASSGIGESTARKLQSLGFTVYGATRRTERLQKLASDGIHPLEMDVTDDESMKARIAKILADSGRIDVLVN
NAGYGSYGAIEDVSIDEGGRQFEVNVFGAMALTRLVLPHMRKQKSGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDAL
RLEVAQFGIDVVVIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPK
TRYAIGFGAKPLIAARNILTDRQFDAVITRATGVPRD

Sequences:

>Translated_277_residues
MPTKVALVTGASSGIGESTARKLQSLGFTVYGATRRTERLQKLASDGIHPLEMDVTDDESMKARIAKILADSGRIDVLVN
NAGYGSYGAIEDVSIDEGGRQFEVNVFGAMALTRLVLPHMRKQKSGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDAL
RLEVAQFGIDVVVIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPK
TRYAIGFGAKPLIAARNILTDRQFDAVITRATGVPRD
>Mature_276_residues
PTKVALVTGASSGIGESTARKLQSLGFTVYGATRRTERLQKLASDGIHPLEMDVTDDESMKARIAKILADSGRIDVLVNN
AGYGSYGAIEDVSIDEGGRQFEVNVFGAMALTRLVLPHMRKQKSGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDALR
LEVAQFGIDVVVIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPKT
RYAIGFGAKPLIAARNILTDRQFDAVITRATGVPRD

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=188, Percent_Identity=38.2978723404255, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=36.6834170854271, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI44680136, Length=264, Percent_Identity=31.0606060606061, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI44680133, Length=264, Percent_Identity=31.0606060606061, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI17738292, Length=264, Percent_Identity=31.0606060606061, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI50726952, Length=289, Percent_Identity=32.5259515570934, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI19743808, Length=287, Percent_Identity=28.9198606271777, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI22507405, Length=297, Percent_Identity=29.6296296296296, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI223718074, Length=273, Percent_Identity=32.967032967033, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI4504503, Length=288, Percent_Identity=29.5138888888889, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI150247226, Length=287, Percent_Identity=29.2682926829268, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=33.8541666666667, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI40548397, Length=265, Percent_Identity=30.9433962264151, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI214010158, Length=265, Percent_Identity=30.9433962264151, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI214010156, Length=265, Percent_Identity=30.9433962264151, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI22758144, Length=265, Percent_Identity=30.9433962264151, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI119392083, Length=269, Percent_Identity=31.5985130111524, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=31.2820512820513, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI59889578, Length=138, Percent_Identity=35.5072463768116, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI32455239, Length=195, Percent_Identity=32.3076923076923, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI5031765, Length=195, Percent_Identity=32.3076923076923, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4503817, Length=203, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923817, Length=190, Percent_Identity=27.8947368421053, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI32483357, Length=192, Percent_Identity=29.6875, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI142976729, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=29.8342541436464, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI7705855, Length=222, Percent_Identity=28.3783783783784, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI226371731, Length=189, Percent_Identity=31.7460317460317, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=266, Percent_Identity=32.7067669172932, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=36.4130434782609, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=32.7683615819209, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788459, Length=192, Percent_Identity=32.2916666666667, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=34.9726775956284, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786812, Length=184, Percent_Identity=32.6086956521739, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=30.8900523560209, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=31.413612565445, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787905, Length=141, Percent_Identity=31.2056737588652, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790717, Length=189, Percent_Identity=30.6878306878307, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=282, Percent_Identity=26.5957446808511, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17557780, Length=276, Percent_Identity=27.536231884058, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17507613, Length=270, Percent_Identity=28.5185185185185, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI32563809, Length=270, Percent_Identity=28.5185185185185, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI71997402, Length=197, Percent_Identity=31.9796954314721, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=193, Percent_Identity=34.1968911917098, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17570069, Length=196, Percent_Identity=32.1428571428571, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=205, Percent_Identity=32.6829268292683, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193210355, Length=261, Percent_Identity=27.9693486590038, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=204, Percent_Identity=31.3725490196078, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=205, Percent_Identity=30.7317073170732, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=31.7708333333333, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=199, Percent_Identity=31.6582914572864, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=31.4720812182741, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=30.4568527918782, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=30.6930693069307, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=30.9278350515464, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=195, Percent_Identity=28.7179487179487, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=215, Percent_Identity=31.6279069767442, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17559552, Length=199, Percent_Identity=30.1507537688442, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=224, Percent_Identity=27.6785714285714, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=196, Percent_Identity=32.6530612244898, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=169, Percent_Identity=30.1775147928994, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=29.4416243654822, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=220, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=27.8350515463918, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17558006, Length=138, Percent_Identity=31.8840579710145, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=204, Percent_Identity=28.921568627451, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=211, Percent_Identity=28.9099526066351, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=210, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=207, Percent_Identity=28.5024154589372, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=33.8383838383838, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=33.6898395721925, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6322226, Length=185, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6319635, Length=189, Percent_Identity=30.6878306878307, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=195, Percent_Identity=30.2564102564103, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=35.9375, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=36.4102564102564, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=38.1720430107527, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24651139, Length=200, Percent_Identity=36, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=36.7875647668394, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=35.8695652173913, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=36.7021276595745, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=31.9796954314721, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=192, Percent_Identity=34.375, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=33.1632653061224, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24641232, Length=211, Percent_Identity=32.7014218009479, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281364892, Length=170, Percent_Identity=31.7647058823529, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007234, Length=196, Percent_Identity=33.1632653061224, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21355319, Length=198, Percent_Identity=29.7979797979798, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=32.4022346368715, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=200, Percent_Identity=33, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648944, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24648693, Length=195, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21355889, Length=195, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24663911, Length=195, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356301, Length=182, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=28.4090909090909, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=31.7948717948718, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640442, Length=213, Percent_Identity=30.0469483568075, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29475; Mature: 29344

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPTKVALVTGASSGIGESTARKLQSLGFTVYGATRRTERLQKLASDGIHPLEMDVTDDES
CCCEEEEEECCCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCEEEECCCCCHH
MKARIAKILADSGRIDVLVNNAGYGSYGAIEDVSIDEGGRQFEVNVFGAMALTRLVLPHM
HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECEECCCCCEEEEEEHHHHHHHHHHHHHH
RKQKSGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDALRLEVAQFGIDVVVIEPGGIA
HHHCCCCEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
TEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPK
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
TRYAIGFGAKPLIAARNILTDRQFDAVITRATGVPRD
CEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PTKVALVTGASSGIGESTARKLQSLGFTVYGATRRTERLQKLASDGIHPLEMDVTDDES
CCEEEEEECCCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCEEEECCCCCHH
MKARIAKILADSGRIDVLVNNAGYGSYGAIEDVSIDEGGRQFEVNVFGAMALTRLVLPHM
HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECEECCCCCEEEEEEHHHHHHHHHHHHHH
RKQKSGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDALRLEVAQFGIDVVVIEPGGIA
HHHCCCCEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCE
TEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPK
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
TRYAIGFGAKPLIAARNILTDRQFDAVITRATGVPRD
CEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]